PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46055.1.p
Common NameBRADI_2g46055, LOC100825505
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WOX
Protein Properties Length: 514aa    MW: 53051.8 Da    PI: 7.8726
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46055.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.73e-1660120257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+++ +eq+++Le+lF++   +p ++e+ ++ +kl     + +++V++WFqNr+ + k+
  Bradi2g46055.1.p  60 KPRWNPRPEQIRILEALFNSgMANPPRDEIPRIRMKLqeygPVGDANVFYWFQNRKSRSKN 120
                       89*****************99****************99999****************995 PP
2Wus_type_Homeobox106.41.7e-3459121264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +++RW+P+peQi+iLe+l++sG+ +P+++ei ri+++L+eyG ++d+NVfyWFQNrk+R+++k
   Bradi2g46055.1.p  59 PKPRWNPRPEQIRILEALFNSGMANPPRDEIPRIRMKLQEYGPVGDANVFYWFQNRKSRSKNK 121
                        579**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.26E-1152120IPR009057Homeodomain-like
PROSITE profilePS5007110.23656121IPR001356Homeobox domain
SMARTSM003892.6E-658125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-659124IPR009057Homeodomain-like
CDDcd000865.69E-659121No hitNo description
PfamPF000467.5E-1460119IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MASPNRQTWP SMFRSKHASQ LWQSQPDMSS SPPSLVSGST AGRTFKSPFS GPEERNTDPK  60
PRWNPRPEQI RILEALFNSG MANPPRDEIP RIRMKLQEYG PVGDANVFYW FQNRKSRSKN  120
KLLRAAGSGA ASRAGAAPAR ACAPAARQHA AASPYTTPQP KQQQLQAPHV SPTMMAPTSS  180
SSSSSDRSSG SSKPVKPTTA AMDLLSPLAA ACHQQMHYQP LGLGLQPATV SAPAATAALE  240
EFVPTATDVE PIFLQYPQGH CLSAGELAAI LGAQYMHAPV QQPAPAPASP AGMLLGLCNE  300
LAAGPTRSGA WIGAGGLGQH WPSGADQLGL GKSSETFNAS AVATDVAHED ATKLGLLHYG  360
FGLSSPPAVN AATTSAPTAV LPLPASSPET GAVTVASAAA AAAGLSNLFA TTTAATSEAV  420
TYSHLQEGEA EAADVGFAGT GVVPRGAAVV CIAGTNAVCN VPAGHLHVKT YFGEGAVLAR  480
FRSGRFEPLA VDASLGLTVE PLQHGDIYYC VLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46055.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037603e-84AP003760.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0063G05.
GenBankAP0149573e-84AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126093e-84CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566976.10.0WUSCHEL-related homeobox 7
SwissprotQ0JKK61e-111WOX7_ORYSJ; WUSCHEL-related homeobox 7
TrEMBLA0A0Q3J9R40.0A0A0Q3J9R4_BRADI; Uncharacterized protein
STRINGLPERR01G22080.11e-115(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Representative plantOGRP1290845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-38homeobox-3