PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g45900.1.p | ||||||||
Common Name | BRADI_2g45900, LOC100823678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 382aa MW: 39690.9 Da PI: 7.8245 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.5 | 2.7e-33 | 184 | 241 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp vv++tYeg+H+h+ Bradi2g45900.1.p 184 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCVVKKRVERSFQDPAVVITTYEGKHTHP 241 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-34 | 168 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 175 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.214 | 178 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-39 | 183 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.1E-26 | 184 | 241 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MSGEFQFHDE LASLFAQRPG SGMQQHQQQE QQQASWFADY LQAGTPMAMD YDLLCRALEL 60 PVVEDVVKME QVVDAAGGGA LTPSGGTGGG TPNTTSSMSS SSSEAGGGGG GGSGGGGAGD 120 QGDSAGRCKK EEGDGEGGKG DDDEGDKSKK GAAAGKGGKA GKGEKRPRQP RFAFMTKSEV 180 DHLEDGYRWR KYGQKAVKNS PYPRSYYRCT TQKCVVKKRV ERSFQDPAVV ITTYEGKHTH 240 PIPSALRGST HLLAAQAAHL HHQHLHGAGG HLGFGGAPGS PFVRNAGAGG IDVLGGLLQP 300 RAHHHHGAMA PPMSHGQQQL GGSVSTSVGS ALATAASSSP PSLQMQHFMS QDFGLLQDML 360 PSFIHGANSN QPPSSPYGKL H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 174 | 244 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 174 | 244 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00168 | DAP | Transfer from AT1G29860 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g45900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358052 | 1e-162 | AK358052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067K13. | |||
GenBank | AK366837 | 1e-162 | AK366837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047E06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569516.1 | 0.0 | probable WRKY transcription factor 71 | ||||
TrEMBL | I1HQ59 | 0.0 | I1HQ59_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45900.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 5e-49 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g45900.1.p |
Entrez Gene | 100823678 |