PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g45780.1.p | ||||||||
Common Name | BRADI_2g45780, LOC100845592 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10293.2 Da PI: 5.8697 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.1e-10 | 20 | 64 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ +E +l+ +a + +G g +W +++r mg ++t+ +++ ++ Bradi2g45780.1.p 20 EWSRQENKLFEEALAYYGEGtpdRWQKVSRAMGGTKTADEVRRHY 64 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.2E-8 | 17 | 70 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.841 | 19 | 68 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.44E-12 | 19 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 20 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.43E-6 | 20 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-5 | 20 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSSAGSRSSS SRGVANAASE WSRQENKLFE EALAYYGEGT PDRWQKVSRA MGGTKTADEV 60 RRHYEILEDD YDLIRSGRLP FPQYNTQGAW N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-21 | 9 | 88 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g45780.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373937 | 2e-60 | AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569502.1 | 4e-62 | protein RADIALIS-like 3 | ||||
Refseq | XP_024314815.1 | 4e-62 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 5e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | I1HQ43 | 9e-61 | I1HQ43_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45780.1 | 1e-61 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-23 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g45780.1.p |
Entrez Gene | 100845592 |