PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g45770.1.p | ||||||||
Common Name | BRADI_2g45770, LOC100845292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10259.2 Da PI: 7.5249 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28 | 5.1e-09 | 20 | 64 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ E +l+ +a + +G g +W +++r +g ++t+ +++ ++ Bradi2g45770.1.p 20 DWSRKENKLFEEALAYYGEGtpdRWQKVSRAIGGTKTADEVRRHY 64 5*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.01 | 16 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 7.8E-7 | 17 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 19 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-12 | 19 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 20 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.94E-5 | 21 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MSSAGSRSSS TRRGANAASD WSRKENKLFE EALAYYGEGT PDRWQKVSRA IGGTKTADEV 60 RRHYEILFDD VDLIESGRLP FPQYNTQGAW N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-24 | 21 | 88 | 11 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g45770.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093593 | 5e-76 | FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569501.1 | 3e-62 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 4e-26 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | I1HQ42 | 6e-61 | I1HQ42_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45770.1 | 1e-61 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-25 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g45770.1.p |
Entrez Gene | 100845292 |