PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g45480.1.p
Common NameBRADI_2g45480, LOC100841626
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 321aa    MW: 34416.1 Da    PI: 6.2335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g45480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.15.7e-26136196259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Bradi2g45480.1.p 136 EDRFSWRKYGQKDILGAKYPRAYFRCTHRhtqSCSASKQVQRTDGDPLLFDVVYHGNHTCA 196
                       8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26123197IPR003657WRKY domain
SuperFamilySSF1182905.89E-24129196IPR003657WRKY domain
PROSITE profilePS5081119.726130193IPR003657WRKY domain
SMARTSM007746.4E-37135197IPR003657WRKY domain
PfamPF031067.6E-24136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEGGSSSSSS DRYAERCALA AELARVLDTV RQLEAHMGGP ADDGGERCRA LVSSMRSSVD  60
RSIRIAMSCC VVTGAPESPP SADGSPRSGG GLDDHAADVS RCRAANAGGQ SKKRKTLPRW  120
STQVRVNSVQ DVTPLEDRFS WRKYGQKDIL GAKYPRAYFR CTHRHTQSCS ASKQVQRTDG  180
DPLLFDVVYH GNHTCAQATH CSTIQSPRLA EIWQTQPAGQ GQEQSSVCAV GFNGTEEGAP  240
APQGLLEPAP LSFPSNKPEP AVVAHAASND FPEWTECHVS GAKNVPDVEL TSSTANSPIG  300
DMEFMLQLAE ADFLDNSRYF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19132195568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g45480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566949.10.0probable WRKY transcription factor 53
TrEMBLI1HQ040.0I1HQ04_BRADI; Uncharacterized protein
STRINGBRADI2G45480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-41WRKY family protein