PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g45000.1.p | ||||||||
Common Name | BRADI_2g45000, LOC100826860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 222aa MW: 24676 Da PI: 9.4503 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.1e-19 | 79 | 132 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n+++s +++e LA kl+L rqV vWFqNrRa+ k Bradi2g45000.1.p 79 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTK 132 67789***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.6 | 1.6e-38 | 79 | 166 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+rL++eveeLr+ Bradi2g45000.1.p 79 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENRRLQREVEELRA 166 9*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-18 | 55 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.1E-19 | 68 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-16 | 76 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.08E-14 | 77 | 135 | No hit | No description |
Pfam | PF00046 | 4.3E-16 | 79 | 132 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.5E-21 | 134 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.1E-9 | 134 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGATSPSGLE LTMAVPGLSS SSGSEGFVGC NNSNNGNGNM RDLDMNQPAS GGEEEEFLMG 60 SVEEDEEEVR GAGGPHRPKK LRLSKEQSRL LEESFRLNHT LSPKQKEALA IKLKLRPRQV 120 EVWFQNRRAR TKLKHTEMEC EYLKRCFGSL TEENRRLQRE VEELRAMRMA PPTVLSPHTR 180 QPLPASALTM CPRCERITAA TGPRTARLPS SFNPRRPSAA F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g45000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF145727 | 0.0 | AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232077.1 | 1e-160 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 1e-127 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 1e-127 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | I1HPV2 | 1e-159 | I1HPV2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45000.1 | 1e-160 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 5e-65 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g45000.1.p |
Entrez Gene | 100826860 |