PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g44770.1.p | ||||||||
Common Name | BRADI_2g44770, LOC100832441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24497.3 Da PI: 6.517 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.7e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv ++ q+G g+W+ ar g++R +k+c++rw++yl Bradi2g44770.1.p 16 KGPWTLEEDLILVGYISQHGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.6e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eEd + +++++lG++ W+ Ia++++ gRt++++k++w++ Bradi2g44770.1.p 69 RGSISPEEDMVIRELHTRLGNK-WSEIAKHLP-GRTDNEVKNYWRT 112 7888******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.13 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.563 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.58E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MARMICGRTG EPAVRKGPWT LEEDLILVGY ISQHGEGSWD NLARSAGLNR NGKSCRLRWL 60 NYLRPGLRRG SISPEEDMVI RELHTRLGNK WSEIAKHLPG RTDNEVKNYW RTRIHKKPHQ 120 SKLQLQAQQH PGLDSVATSE SASASASTSQ ASSTVGDEYM QASFPYPELT WVADQSDVGA 180 ITTRFFSSSD DFGDNVWNVE DRFWETLPFA DPVYEAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 12 | 117 | 23 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g44770.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375516 | 1e-136 | AK375516.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3096J04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566926.2 | 1e-162 | myb-related protein 340 | ||||
TrEMBL | I1HPS5 | 1e-161 | I1HPS5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G44770.1 | 1e-162 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-57 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g44770.1.p |
Entrez Gene | 100832441 |