PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g44117.1.p
Common NameBRADI_2g44117, LOC100826339
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 534aa    MW: 60227.2 Da    PI: 9.4705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g44117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000192723341148
                       HHHHHHHHHH.HHHHCTSCCC...........................TTS-STCHHHHHHHH CS
               HLH  11 rRRdriNsaf.eeLrellPkas........................kapskKlsKaeiLekAv 48 
                       rR++ iN+ + + Lr ++ k+                         + +++KlsK +++e ++
  Bradi2g44117.1.p 272 RRMKAINKEIkAILRGIIEKRQksmqsgetneddllglllesnmdySDSDGKLSKGMTVEDVI 334
                       9*********999*******777************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.630.106.6E-11693533IPR001128Cytochrome P450
SuperFamilySSF482649.3E-10694533IPR001128Cytochrome P450
PfamPF000671.2E-82100508IPR001128Cytochrome P450
PRINTSPR004638.4E-17104123IPR002401Cytochrome P450, E-class, group I
PRINTSPR004638.4E-17332349IPR002401Cytochrome P450, E-class, group I
PRINTSPR003853.4E-13343360IPR001128Cytochrome P450
PRINTSPR004638.4E-17352378IPR002401Cytochrome P450, E-class, group I
PRINTSPR003853.4E-13395406IPR001128Cytochrome P450
PRINTSPR004638.4E-17471481IPR002401Cytochrome P450, E-class, group I
PRINTSPR003853.4E-13472481IPR001128Cytochrome P450
PROSITE patternPS000860474483IPR017972Cytochrome P450, conserved site
PRINTSPR003853.4E-13481492IPR001128Cytochrome P450
PRINTSPR004638.4E-17481504IPR002401Cytochrome P450, E-class, group I
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016021Cellular Componentintegral component of membrane
GO:0004497Molecular Functionmonooxygenase activity
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGGGTSAAGV ALLRDASPWT LLAGAAAVAI LCCAVQILEW AWWAPRRMDR SLRAQGLRGT  60
QYRFFRGDLK EEQRLMAAAL SRPVPMDRAH DIVSRVAPLL HRVMEEHGKL SFTWFGPCPR  120
IIITDPELVR EVLSNKFGHF EKTKLARLSK LLVGGLAVLD GEKWIKHRRI MNPAFHAEKL  180
KRMLPAFSAS CSELIGKWEN LFAVSHGGIQ LDVWSEFQNL SGDVISRAAF GVSHQEGCRI  240
FLLQAEQAER LVQSFWTCYI PGYSLLPTEN NRRMKAINKE IKAILRGIIE KRQKSMQSGE  300
TNEDDLLGLL LESNMDYSDS DGKLSKGMTV EDVIGECKLF YFAGMETTAV LLTWTVVVLS  360
MHPEWQDRAR EEVLHVFGQS KPDLNGLNRL KVVTMILNEV LRLYPPVVQI NRRTNKKIEL  420
RGVMYPQGVM LALPLICIHR DPSVWGNDAD KFNPGRFSEG VPKACRETGA FFPFSWGPRT  480
CIGQNFALLE AKVAISMILQ RYVFELMPTY VHAPYTVLAL HPQHTVPVRL HRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6c93_A1e-44155508103458Cytochrome P450 4B1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g44117.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566907.10.0cytochrome P450 72A13
SwissprotQ9LUC60.0C7A14_ARATH; Cytochrome P450 72A14
TrEMBLI1HPL40.0I1HPL4_BRADI; Uncharacterized protein
STRINGBRADI2G44117.10.0(Brachypodium distachyon)