PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g43600.2.p
Common NameBRADI_2g43600, LOC100828596
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 480aa    MW: 52493.3 Da    PI: 7.9785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g43600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08103128227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C f++rt tC yG+ CkF H++
  Bradi2g43600.2.p 103 GEKDCAFYMRTRTCMYGEGCKFDHPQ 128
                       7889********************97 PP
2zf-CCCH28.42.7e-09152178127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+ff++t  C + ++CkF+H++
  Bradi2g43600.2.p 152 PGEPDCPFFMKTRRCGFASKCKFNHPK 178
                       5789*********************96 PP
3zf-CCCH23.59.7e-08207227425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       e+C+ff + G Ck+G +CkF+H
  Bradi2g43600.2.p 207 EPCPFFPK-GKCKFGTNCKFSH 227
                       89******.************* PP
4zf-CCCH32.61.4e-10280306127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+ +tG C yG++C+F+H++
  Bradi2g43600.2.p 280 PGEVDCSFYIKTGSCMYGSTCRFNHPE 306
                       57899********************96 PP
5zf-CCCH375.7e-12367391226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+++tG+Ck+ ++CkF+H+
  Bradi2g43600.2.p 367 GETVCDFYMKTGFCKFSEKCKFHHP 391
                       6789********************9 PP
6zf-CCCH42.69.7e-14424447427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       e C+f+++tGtCk+G +CkF H+p
  Bradi2g43600.2.p 424 EVCSFYMKTGTCKFGVQCKFDHPP 447
                       78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.446101129IPR000571Zinc finger, CCCH-type
SMARTSM003560.12101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5102128IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6103128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235151179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083151178IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-6153178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-5156182IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011204229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873204230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5205228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5207229IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5207227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192279307IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5279306IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6283307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4285306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7365393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371365393IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7365392IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9367391IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5370391IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403420448IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7420447IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6422449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6424447IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-11424447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSDFPFYPYG GGGAGDDPAA RYSSYEVDLI AARYAGDRFP YPSASGAFDA HVGARRPSEV  60
LYHQYIMGSH STMGQSEALY SSNSMAKRPR VESSLPIYPQ RPGEKDCAFY MRTRTCMYGE  120
GCKFDHPQWV PEGGIPNWKE APKDEESYPE RPGEPDCPFF MKTRRCGFAS KCKFNHPKEK  180
VNVTVAGTGN KGSQISESSI SPVKPSEPCP FFPKGKCKFG TNCKFSHAKD IEVPSSGHES  240
KSTATVEAAG HNIAASDSVS AKKLTPVAQE HNSKGMPIRP GEVDCSFYIK TGSCMYGSTC  300
RFNHPERHHP VLDFPLVAPL GQSILPTSSV VPVEMLNRAT NFLPNFDFHA THVPIEPEPI  360
AYPQRPGETV CDFYMKTGFC KFSEKCKFHH PVDRSASAPV ASTEPRQKSV TLTLAGLPRR  420
EDAEVCSFYM KTGTCKFGVQ CKFDHPPPEE AIAKVSKQGA AEEKGGKKEA AGLSYVLGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g43600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569363.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
STRINGBRADI2G43600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Representative plantOGRP67541519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-139floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]