PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g43362.1.p
Common NameBRADI_2g43362, LOC100840817
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 1034aa    MW: 107712 Da    PI: 4.1347
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g43362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1277.2e-09942966125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg Cr lL+YPrGA +V+Ca C t+
  Bradi2g43362.1.p 942 CGCCRELLAYPRGAVHVQCAGCLTI 966
                       9*********************986 PP
2zf-LSD140.44.9e-139801004125
           zf-LSD1    1 CggCrtlLsYPrGApsVRCalCdtV 25  
                        Cg C tlL+YP+GAp+V+C+lC +V
  Bradi2g43362.1.p  980 CGRCETLLMYPFGAPAVKCSLCLFV 1004
                        **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.0E-12939969IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-8942966IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-89781005IPR005735Zinc finger, LSD1-type
PfamPF069439.9E-119801004IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MASSPGTGLP PGSSPVSSPT PFPPAPPPQE SPQPTTADPL EPAQSDHAKP TPQPHPGKAT  60
ATSDAYKSPA PMDGLTREAG RPPLLSPQEA TLASLALEAA KPEEQTPVSP PPLVEVFPEA  120
AARAASPIPS PQIAAASAAA ALPPSTTPSP PASTWTSAGA SRDAPLTDSA AMASEEVARL  180
PAALEPIDAD PLTAQASATK SMAERLSPQQ HLRPISSTSL IGCENFELGL LPPPPLAEIT  240
HELSDAAGTD EIDVAEEAAG TSPAVAATDE KTDSALAGPL IFENGAEGSS ELPVLTPRSP  300
QMEGELCSLE MAPPGFESFE SSWTPLLPAT LPAETTHSLR NAAATEAMAV PEEAARSLPI  360
LAVEPMTDTK PGLPSPESLA EGPFQQSLLR PPSPITQAEP CSPDTPPPGF ENFKLSWLPP  420
PNEATYATKA AAVTLEEAIL PVPTLEAMDV ETDTACSLLP PLENDPLLRP TTPMPQSAPC  480
SPQAPPGFEN SDSSWPPLSN ALSGTAYISP NETATEPLAV TFEEATGPTP TAEAIDVKIR  540
AKHPLLLPLE SGVEGSLKEP QQKPPSPTMQ DAPCSPQAPP GFENSESSWP PLSTALSGTA  600
YITPDETATE PLAMTFEVAT GPTPAIEAID VKIRAKHPLL LPLESGVEGS LQEPKQKPPS  660
PTMQDAPGSP DMAPPGFENF KSSQLPQHSP PLMQTTCTLH DPATIEAVHV SEETAQTLPA  720
LEGMSVNMDT SSENGAGSFQ QQPPRLPCPM EKGTACSPEI VPSGHENLES LQLSPLPVLP  780
QVQTPDALVD VVAIEAVVGP LEEVHHPPPV LLKIEEGTAP IRPPPLESGS EGSLPQLEQH  840
VHSVTTLAVD TLTGAPATKS VAVESEERAP PQLALQAVDT NMECATTLLT LSKKEGEDSL  900
PQPQHPPCSQ TVQAAPCSLE ALELLPPPPP PFLNKEMGQM VCGCCRELLA YPRGAVHVQC  960
AGCLTINLVL EAHEVGKVHC GRCETLLMYP FGAPAVKCSL CLFVTEIGER KVRPRISVEQ  1020
VVPPHPPQLA NQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g43362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232018.10.0proline-rich protein 36
RefseqXP_010232019.10.0proline-rich protein 36
RefseqXP_014755141.10.0proline-rich protein 36
RefseqXP_014755142.10.0proline-rich protein 36
TrEMBLA0A0Q3IS860.0A0A0Q3IS86_BRADI; Uncharacterized protein
STRINGTRIUR3_35201-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Representative plantOGRP1433633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.17e-30lsd one like 2