PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g42500.5.p | ||||||||
Common Name | BRADI_2g42500, LOC100824902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 415aa MW: 47461.6 Da PI: 8.9484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 255 | 295 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e++ v++ G++ Wkt a+++g +++ ++k+ w+ Bradi2g42500.5.p 255 KWTQEEYEKIRWFVEENGTD-WKTLAQELG--KSRIHVKDAWRR 295 8*******************.********8..8******99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.006 | 175 | 248 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-6 | 176 | 235 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6 | 179 | 250 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.91 | 252 | 299 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-8 | 253 | 310 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 255 | 306 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.992 | 255 | 297 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 1.1E-9 | 256 | 312 | No hit | No description |
PROSITE profile | PS50090 | 7.596 | 298 | 367 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.32E-5 | 300 | 368 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-4 | 302 | 369 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-8 | 307 | 368 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.124 | 369 | 414 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MQKQIFDTAI ADLGSDHAKR YKVEGKLSSN SKLKKSKQKR KDGEPALDIS ACDQIVTRED 60 NKRQKEHSFV LEQSSQNYNT NKGENREIKE RENGSDKASP GLSPNGSAGG EEADIDGKND 120 KQKRKSKEVV GGGKKEKEKA ARSKNKGKRV SFADSMEVFT IEGGDDEDGG RSGESKLVRG 180 KRFTPEEDTI LMEAMKNYAE MKQLGEKGLE MFRNSSKHPE LKGCWSDIAE SLPHRPLGAT 240 YRRANVLLCR SAERKWTQEE YEKIRWFVEE NGTDWKTLAQ ELGKSRIHVK DAWRRIKPKN 300 LKKGRWTQEE IQILFDLVNI DLRLKAREEK KIDDHRVLKD NISWEAISDK MTTRSHKFCC 360 LKWYQSLASP LVQQGIWADV DDYLLVEALQ KIDAVCIEDV DWDCLLDHRR AMSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g42500.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014754924.1 | 0.0 | cyclin-D-binding Myb-like transcription factor 1 isoform X2 | ||||
TrEMBL | A0A0Q3MW66 | 0.0 | A0A0Q3MW66_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G42500.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 5e-80 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g42500.5.p |
Entrez Gene | 100824902 |