PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g42500.3.p
Common NameBRADI_2g42500, LOC100824902
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 415aa    MW: 47461.6 Da    PI: 8.9484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g42500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-08255295346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE e++   v++ G++ Wkt a+++g  +++ ++k+ w+ 
  Bradi2g42500.3.p 255 KWTQEEYEKIRWFVEENGTD-WKTLAQELG--KSRIHVKDAWRR 295
                       8*******************.********8..8******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.006175248IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-6176235IPR009057Homeodomain-like
SMARTSM007171.6179250IPR001005SANT/Myb domain
SMARTSM007170.91252299IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-8253310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-8255306IPR009057Homeodomain-like
PROSITE profilePS500906.992255297IPR017877Myb-like domain
PfamPF139211.1E-9256312No hitNo description
PROSITE profilePS500907.596298367IPR017877Myb-like domain
SuperFamilySSF466894.32E-5300368IPR009057Homeodomain-like
SMARTSM007175.2E-4302369IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-8307368IPR009057Homeodomain-like
PROSITE profilePS500904.124369414IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MQKQIFDTAI ADLGSDHAKR YKVEGKLSSN SKLKKSKQKR KDGEPALDIS ACDQIVTRED  60
NKRQKEHSFV LEQSSQNYNT NKGENREIKE RENGSDKASP GLSPNGSAGG EEADIDGKND  120
KQKRKSKEVV GGGKKEKEKA ARSKNKGKRV SFADSMEVFT IEGGDDEDGG RSGESKLVRG  180
KRFTPEEDTI LMEAMKNYAE MKQLGEKGLE MFRNSSKHPE LKGCWSDIAE SLPHRPLGAT  240
YRRANVLLCR SAERKWTQEE YEKIRWFVEE NGTDWKTLAQ ELGKSRIHVK DAWRRIKPKN  300
LKKGRWTQEE IQILFDLVNI DLRLKAREEK KIDDHRVLKD NISWEAISDK MTTRSHKFCC  360
LKWYQSLASP LVQQGIWADV DDYLLVEALQ KIDAVCIEDV DWDCLLDHRR AMSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g42500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754924.10.0cyclin-D-binding Myb-like transcription factor 1 isoform X2
TrEMBLA0A0Q3MW660.0A0A0Q3MW66_BRADI; Uncharacterized protein
STRINGBRADI2G42500.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.15e-80MYB_related family protein