PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g42426.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 711aa    MW: 82537.2 Da    PI: 7.0683
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g42426.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.3e-1519106190
              FAR1   1 kfYneYAkevGFsvrkskskks.......krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                       ++Yn Y+ evGF +r s+sk+        k+    t ++ vC ++g++++++++         + r+gCka++++ ++kd+ w++++++l+Hn
  Bradi2g42426.2.p  19 EYYNLYSWEVGFGIRYSRSKSYkcksgprKDVVYRTVQHIVCGCQGFPQKQNTS---------SVRCGCKAMIRLLRSKDHGWYIKECKLQHN 102
                       69*************98877665667753333334567899******9987655.........9***************************** PP

              FAR1  87 Hela 90 
                       H+l+
  Bradi2g42426.2.p 103 HKLS 106
                       **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.4E-1219106IPR004330FAR1 DNA binding domain
PfamPF105512.5E-15229298IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
RDLCPQIGLC FDSLPEAYEY YNLYSWEVGF GIRYSRSKSY KCKSGPRKDV VYRTVQHIVC  60
GCQGFPQKQN TSSVRCGCKA MIRLLRSKDH GWYIKECKLQ HNHKLSRNRG EKLCWPSHKH  120
IDQCTRELVR NLRENNVPLT KVYSILGTYF GSTEDIPFNK RLLQNLCKQI SKEEANDDVR  180
KTLDIFTKMR DEDPSFVYTA DLDSDGRIRT LIWVNGKSKL DYRYFGDAIT FDTTYKTNLH  240
GMPFGLFVGV NNHFQSIIFS GVLMRQETIE SFEWIFREFT SLMGGKPPVT ILTECHTMYI  300
LYVPYCLHIC HLIHVCHSAY CLSSLLIDMW CKWHVLKMAK ERLGSIYTKY SNFKPEFHKL  360
INYSITVSEF EAAWEELLEK YDLREHHFLT PIYESRHRWA KPYFSGICAK MTSTQQNESA  420
NHMLKGYVPP GAPMHLFVKQ YNKLIADRIS KEDSENQRTR MGGVVLKTGW PIEKHAATVY  480
TSAMLEMFSD HIFDSAAYNV VEVEVNKKYM TIHSDASKRE KWSKVHYEVT ISDDGGQYHC  540
ECRLAEHMGM LFCHSIRVML RLGVDKIPQP HILKRWTKDA NDVLPDYLAH LQKDRGSTRS  600
QSFRHASLHV AALELVAIGD KNVDCYHDVL NYMKDGTKKF DEMYQQTDRR SLQELLLAPI  660
VISAELDSEE EAGYGADLEE VNEVTDEDEE FQSDLEEESD FVKINTVFCA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g42426.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DDF70.0A0A2K2DDF7_BRADI; Uncharacterized protein (Fragment)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-74FAR1-related sequence 5