PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g42240.1.p
Common NameBRADI_2g42240, LOC100830626
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 303aa    MW: 32906.4 Da    PI: 8.9997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g42240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      ++rWT eE+  l+ +v+++G+g W+tI r          R+  ++k++w+++
  Bradi2g42240.1.p  5 KQRWTSEEEAALKAGVAKHGPGKWRTILRDPDfsavlCLRSNVDLKDKWRNL 56
                      79***********************************66***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.535161IPR017930Myb domain
SuperFamilySSF466897.18E-15259IPR009057Homeodomain-like
SMARTSM007171.6E-6459IPR001005SANT/Myb domain
PfamPF002492.7E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-13556IPR009057Homeodomain-like
CDDcd116603.53E-19656No hitNo description
Gene3DG3DSA:1.10.10.104.3E-17126198IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-16127198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.6E-15128191IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150425.289128196IPR005818Linker histone H1/H5, domain H15
PfamPF005381.2E-10133189IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALKAGV AKHGPGKWRT ILRDPDFSAV LCLRSNVDLK DKWRNLSVTA  60
GGYGSREKAR MALKQGKRAP KLITGPMDVD ADNLDNAQNT VINAKPLAIA VESRQHESRQ  120
HENSSEKSVA RLDDLILEAI KKLNEPSGSN KTAIATYIEE QYWPPTDFQR LLSTKLKALV  180
ATGKLTKVNQ KYRIAPSSVS LGGRSTMVYC TKDNGENISI KQLTKPQVDA ELDMMTHMTK  240
EEAAAFAAKA VAEAEVANAE AEEAARVAEA AEAEAEAAKA FLDAVMLTVQ NRNTASAILR  300
AF*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g42240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651520.0AK365152.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031H21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569286.10.0single myb histone 2
SwissprotB4FT401e-122SMH2_MAIZE; Single myb histone 2
TrEMBLI1HNZ80.0I1HNZ8_BRADI; Uncharacterized protein
STRINGBRADI2G42240.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-69telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]