PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g42023.1.p | ||||||||
Common Name | BRADI_2g42023, LOC100843345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21287.5 Da PI: 6.5061 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 114 | 172 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d ++v++tY+g H+h+ Bradi2g42023.1.p 114 MDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERERDDARFVITTYHGVHDHP 172 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-32 | 102 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-28 | 107 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.145 | 109 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-35 | 114 | 173 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-24 | 115 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSSYLLSMSP VDEIGGYVDD GSDDMTAGYL SFDIDEYYLP EADHALYTGQ QAAADPPVAH 60 SLQADDADSY KSGSKAASSE GLSYHDKINN HQSLTSAGKS CKIAFKTRSE VEVMDDGYRW 120 RKYGKKMVKN SPNPRNYYRC SSEGCRVKKR VERERDDARF VITTYHGVHD HPAPLPPRGC 180 AGYSLAQPHY Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-24 | 102 | 174 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g42023.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827403 | 5e-96 | KR827403.1 Triticum aestivum WRKY52 transcriptional factor mRNA, complete cds. | |||
GenBank | KT728910 | 5e-96 | KT728910.1 Triticum aestivum clone LKc002 WRKY protein mRNA, partial cds. | |||
GenBank | KT865877 | 5e-96 | KT865877.1 Triticum aestivum clone KL04 WRKY mRNA, partial cds. | |||
GenBank | KT865878 | 5e-96 | KT865878.1 Triticum aestivum clone KL05 WRKY mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566817.1 | 1e-141 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A0Q3R4M9 | 1e-140 | A0A0Q3R4M9_BRADI; Uncharacterized protein | ||||
STRING | Traes_3B_E408A7B56.1 | 1e-60 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g42023.1.p |
Entrez Gene | 100843345 |