PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g41550.1.p | ||||||||
Common Name | BRADI_2g41550, LOC100835399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 502aa MW: 54515.8 Da PI: 8.4147 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.5e-05 | 81 | 101 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Bradi2g41550.1.p 81 CEICGKGFQRDQNLQLHRRGH 101 *******************88 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0011 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Bradi2g41550.1.p 156 WKCDKCSKKYAVQSDWKAHSKIC 178 58*****************9876 PP | |||||||
3 | zf-C2H2 | 11.6 | 0.00087 | 186 | 204 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Bradi2g41550.1.p 186 DCGTVFSRRDSFITHRAFC 204 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.37E-8 | 78 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.4E-5 | 78 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.489 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 144 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.37E-8 | 151 | 176 | No hit | No description |
SMART | SM00355 | 150 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MFHHHLQQQQ QQQLRRDQAE SADQDSSMSN LTTSASAGAN PPPPSSGSNK RKRSLPGNPD 60 PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKELVRKKV 120 YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT 180 REYKCDCGTV FSRRDSFITH RAFCDALTEE SAKAIGGLPV SMAQHHQHAM LFSPPPPQHH 240 HIMHQDNLAA FQEHHHAMQQ QQVQQQHCNY AVKPEMQPWP TAAMPPYDDG DVHHHHALLQ 300 QPPLCNVVAN ATPQSSAAPT PQAHQQQQQQ MLPAPAAGAH LSATALLQKA AQMGATIGGS 360 AHYGTQMAGA ATSSAAANGN GNGAFGLGLS CLNNGNNQQQ QQQMMGLAAR TAGGRGSEVD 420 GEGMTRDFLG LRAFSHRDIL GLAGFDSTCM AAAVNNNNSS SSSAMAPACY EQPQQHGLGQ 480 STQPQQQQSS DEPWHGMSSH S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 152 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 152 | 213 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 118 | KLKQRGSKELVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g41550.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362855 | 0.0 | AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06. | |||
GenBank | AK375351 | 0.0 | AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231936.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-112 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A0Q3R4E5 | 0.0 | A0A0Q3R4E5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G41550.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 7e-93 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g41550.1.p |
Entrez Gene | 100835399 |
Publications ? help Back to Top | |||
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