PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g38560.1.p

Common Name

BRADI_2g38560, LOC100843053

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 327aa MW: 36287.4 Da PI: 5.2756

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g38560.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	67.6	2.1e-21	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd llvd+v+q+G g+W++ ar+ g++Rt+k+c++rw++yl Bradi2g38560.1.p 42 RGPWTAEEDALLVDYVAQHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 89 89********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ Bradi2g38560.1.p 95 RGNITAEEQLLILDLHSRWGNR-WSKIAQRLP-GRTDNEIKNYWRT 138 7999****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.641	37	93	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-31	40	136	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-17	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-18	42	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-25	43	96	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-13	44	89	No hit	No description
PROSITE profile	PS51294	18.458	94	144	IPR017930	Myb domain
SMART	SM00717	1.6E-14	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	6.6E-15	95	138	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-23	97	142	IPR009057	Homeodomain-like
CDD	cd00167	2.30E-11	99	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDMDKEYYMG MEAAMSPGGS SEPAKAVAVA ATASEDEGDL RRGPWTAEED ALLVDYVAQH 60 GEGRWNSLAR CAGLRRTGKS CRLRWLNYLR PDVRRGNITA EEQLLILDLH SRWGNRWSKI 120 AQRLPGRTDN EIKNYWRTRV QKHARQLRCD VNSRQFRDVV RLVWMPRLIE RMHADANNAG 180 VPPAPETMTT TMATRADHRH GMSRSEPMIG RAADATAEMS PDDTSSTLRS SVLTAEMVST 240 MHEGQYRLSP WGAASAVTTN NADGTAVNCF VRRDEGAMGG DDHAIHGGDD ELGGSWSELL 300 AATGLPEFEF GDFDDNLWSL EDIYAN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-25	39	136	24	120	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g38560.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569075.1	0.0	transcription factor JAMYB
TrEMBL	I1HMR9	0.0	I1HMR9_BRADI; Uncharacterized protein
STRING	BRADI2G38560.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	5e-78	myb domain protein 108

Link Out ? help Back to Top
Phytozome	Bradi2g38560.1.p
Entrez Gene	100843053