PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38390.1.p
Common NameBRADI_2g38390, LOC100839205
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 301aa    MW: 32991.1 Da    PI: 5.6892
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.6e-092312642255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yp+++++ +LA+ +gL+ +q+ +WF N+R ++
  Bradi2g38390.1.p 231 WPYPTEDDKVRLAAMTGLDPKQINNWFINQRKRH 264
                       59*****************************885 PP
2ELK33.21.2e-11184205122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++Ll+KYsg+L+ L++EF+
  Bradi2g38390.1.p 184 ELKEMLLKKYSGCLSRLRSEFL 205
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.9E-204084IPR005540KNOX1
PfamPF037903.1E-194382IPR005540KNOX1
SMARTSM012568.4E-2590141IPR005541KNOX2
PfamPF037912.4E-2294140IPR005541KNOX2
PROSITE profilePS5121310.423184204IPR005539ELK domain
SMARTSM011883.6E-6184205IPR005539ELK domain
PfamPF037891.4E-8184205IPR005539ELK domain
PROSITE profilePS5007112.325204267IPR001356Homeobox domain
SuperFamilySSF466891.28E-19206274IPR009057Homeodomain-like
SMARTSM003894.5E-14206271IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-26209269IPR009057Homeodomain-like
CDDcd000869.13E-13216268No hitNo description
PfamPF059201.3E-16224263IPR008422Homeobox KN domain
PROSITE patternPS000270242265IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDLYSIHPG ISRGGGGAAC SEASGVAGSP PPPDLTATAE LTKAQIAAHP RYPSLLSAYI  60
ECRKVGAPPD VAVLLEEMSR ERRPGYEAAG AGEIGLDPEL DEFMEAYCRV LWRYKEELSR  120
PLDEAASFLA TVRTQLSNLC GGGARATFHS DEFVGSSEDE PCSGDGDASE AGMQEHTSRL  180
ADHELKEMLL KKYSGCLSRL RSEFLKKRKK GKLPKDARLA LMDWWNTHYR WPYPTEDDKV  240
RLAAMTGLDP KQINNWFINQ RKRHWKPSED MRFALMEGVN GGGGSSSGTT LYFDTGTIGP  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199208LRSEFLKKRK
2205209KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4650420.0AB465042.1 Triticum aestivum WLG4 mRNA for KN1-type homeobox transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569063.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-142KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLI1HMP80.0I1HMP8_BRADI; Uncharacterized protein
STRINGBRADI2G38390.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-83KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]