PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37795.1.p
Common NameBRADI_2g37795, LOC100845893
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 714aa    MW: 82954 Da    PI: 8.031
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37795.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.71.2e-2525117191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                       +fYn+YA e GFsvrks+ +  + n+ei+ r+fvCs+eg+ ee++ k ++++rr+r+ tr+gC+akl++ + k +g+w v+++  eH+H+lap
  Bradi2g37795.1.p  25 EFYNSYALEKGFSVRKSYVEWDEANEEIILRKFVCSREGSCEEKHMKrEDRKRRPRNLTRVGCRAKLVIARVKeTGRWFVKDFIDEHTHPLAP 117
                       6***************************************99988775788999****************9999****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-2425117IPR004330FAR1 DNA binding domain
PfamPF105512.7E-34238332IPR018289MULE transposase domain
PROSITE profilePS5096610.151516555IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVDESVDEYL DIVERMFGSE DDGFEFYNSY ALEKGFSVRK SYVEWDEANE EIILRKFVCS  60
REGSCEEKHM KREDRKRRPR NLTRVGCRAK LVIARVKETG RWFVKDFIDE HTHPLAPRDL  120
ACLLHSHRRI SDEQKADIVE MEISGLRKHK IMDILVMQYG GYDEVGCTMR DIYNFCHLYK  180
QETIATGDAQ TVICHMMARQ ERDPNFFFKN LVDGEGHLKG LFWADSQSRL DYEVFGDVVV  240
FDSTYRTNKY NLLFVPFVGL NHHRSTVVFG CGIISHETSE SYEWMLRTFS AAMAQKHPIS  300
VITDGDLAMQ RAIRVVWPDT IHRLCVWHIQ QNILRHLGDD LVKEEFRSVI YDRSPIEEHE  360
KKWMDFLERS KVTSEESWLH QMYQMRKLWC ASYLVGHCFL GLSSNQRSES LNSVLHTHLD  420
GSMTLFKMLE HYERCLLTRR LNKSILDIVA LQSVPFTEVD ASSLEKHAAQ VFTPAMFALV  480
RWSTNAASNC TMFEIIDADN LSTYVVAKKD RREKKFQVHC EVKEGSLDRI SCSCRKLECL  540
RTPCSHILYV LGILQEERLP ECCVPTRWTM SAKAAFPKTR KNNMYDYSVS LKRYRELRNL  600
SHAACFLASQ SVEAYDRLKL VLNVQVDNKK SSSGHKECMR YGPVLPQTAQ VDSGELEKVL  660
DPVHVQGRGA PKKRLKPQKR KRSTVKCGYC RQEGHNRRKC SEWEEDKKLA SVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378DRKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37795.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314638.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1HMH80.0I1HMH8_BRADI; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-99FAR1-related sequence 5