PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g37790.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 301aa MW: 34318.2 Da PI: 8.6816 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.9 | 1.9e-06 | 33 | 57 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ C+ s+srk++L+rH+ tH Bradi2g37790.3.p 33 FACHvdGCPFSYSRKDHLNRHLLTH 57 78*********************99 PP | |||||||
2 | zf-C2H2 | 18.5 | 5.6e-06 | 62 | 87 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++ Fs++ n++rH + H Bradi2g37790.3.p 62 FICPmeGCNRKFSTRGNMQRHVQEmH 87 78*******************99877 PP | |||||||
3 | zf-C2H2 | 18.9 | 4.1e-06 | 99 | 123 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk F+ s L++H +H Bradi2g37790.3.p 99 FICPevNCGKAFKFASKLQKHEDSH 123 78*******************9888 PP | |||||||
4 | zf-C2H2 | 17.3 | 1.3e-05 | 190 | 214 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC+ sFs ksnL +Hi+ H Bradi2g37790.3.p 190 KCHfeDCKCSFSKKSNLDKHIKAvH 214 7********************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.1E-7 | 30 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-9 | 30 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.307 | 33 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 33 | 57 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 35 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-7 | 60 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.39E-7 | 60 | 88 | No hit | No description |
SMART | SM00355 | 1.9E-5 | 62 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.053 | 62 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-6 | 95 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.66E-5 | 96 | 124 | No hit | No description |
SMART | SM00355 | 0.041 | 99 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.032 | 99 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5 | 131 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 133 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 13 | 159 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-6 | 170 | 211 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.96E-8 | 170 | 231 | No hit | No description |
PROSITE profile | PS50157 | 11.863 | 189 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.098 | 189 | 214 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 213 | 242 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.954 | 220 | 246 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3 | 220 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 222 | 246 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MQEGLEWTSI GMGDPPEKLH QDCLIHVLLQ RPFACHVDGC PFSYSRKDHL NRHLLTHQGK 60 LFICPMEGCN RKFSTRGNMQ RHVQEMHKDG SPCESKKEFI CPEVNCGKAF KFASKLQKHE 120 DSHAKLEYTE VICCEPGCMK TFTNVECLKA HNQSCHRYVQ CDVCDTKQLK KNFKRHQRMH 180 EGSRVAETVK CHFEDCKCSF SKKSNLDKHI KAVHEQSRPY ACGFAGCGKK FSYKHVRDNH 240 EKSSAHVYFE GDFVESGPHP GGRKRKPIPV DTFTRKRVAA PGDVPTYADG TGYLRWLLSG 300 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tf6_A | 3e-13 | 30 | 153 | 40 | 157 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
1tf6_D | 3e-13 | 30 | 153 | 40 | 157 | PROTEIN (TRANSCRIPTION FACTOR IIIA) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g37790.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755326.1 | 0.0 | transcription factor IIIA isoform X2 | ||||
Refseq | XP_014755327.1 | 0.0 | transcription factor IIIA isoform X2 | ||||
Refseq | XP_024314639.1 | 0.0 | transcription factor IIIA isoform X2 | ||||
Refseq | XP_024314640.1 | 0.0 | transcription factor IIIA isoform X2 | ||||
Swissprot | Q84MZ4 | 4e-86 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2K2DCE2 | 0.0 | A0A2K2DCE2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G37790.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72050.1 | 7e-89 | transcription factor IIIA |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g37790.3.p |