PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37790.2.p
Common NameBRADI_2g37790
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 274aa    MW: 31289.8 Da    PI: 9.0791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37790.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06630123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      + C+   C+ s+srk++L+rH+ tH
  Bradi2g37790.2.p  6 FACHvdGCPFSYSRKDHLNRHLLTH 30
                      78*********************99 PP
2zf-C2H218.64.9e-063560123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                      + Cp   C++ Fs++ n++rH +  H
  Bradi2g37790.2.p 35 FICPmeGCNRKFSTRGNMQRHVQEmH 60
                      78*******************99877 PP
3zf-C2H219.13.6e-067296123
                      EEET..TTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                      + Cp  +Cgk F+  s L++H  +H
  Bradi2g37790.2.p 72 FICPevNCGKAFKFASKLQKHEDSH 96
                      78*******************9888 PP
4zf-C2H217.51.2e-05163187223
                       EET..TTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                       kC+  dC+ sFs ksnL +Hi+  H
  Bradi2g37790.2.p 163 KCHfeDCKCSFSKKSNLDKHIKAvH 187
                       7********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-9332IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.307635IPR007087Zinc finger, C2H2
SMARTSM003550.0018630IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-71666No hitNo description
Gene3DG3DSA:3.30.160.609.8E-83361IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.9E-53560IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0533565IPR007087Zinc finger, C2H2
PROSITE patternPS0002803760IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-66896IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.64E-56997No hitNo description
PROSITE profilePS5015711.03272101IPR007087Zinc finger, C2H2
SMARTSM003550.0417296IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807496IPR007087Zinc finger, C2H2
SMARTSM003556.5104129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106129IPR007087Zinc finger, C2H2
SMARTSM0035513132153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-6143184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.06E-9143204No hitNo description
SMARTSM003550.098162187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.863162192IPR007087Zinc finger, C2H2
PROSITE patternPS000280164187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5186215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954193219IPR007087Zinc finger, C2H2
SMARTSM003555.3193219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLQRPFACHV DGCPFSYSRK DHLNRHLLTH QGKLFICPME GCNRKFSTRG NMQRHVQEMH  60
KDGSPCESKK EFICPEVNCG KAFKFASKLQ KHEDSHAKLE YTEVICCEPG CMKTFTNVEC  120
LKAHNQSCHR YVQCDVCDTK QLKKNFKRHQ RMHEGSRVAE TVKCHFEDCK CSFSKKSNLD  180
KHIKAVHEQS RPYACGFAGC GKKFSYKHVR DNHEKSSAHV YFEGDFVESG PHPGGRKRKP  240
IPVDTFTRKR VAAPGDVPTY ADGTGYLRWL LSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-13312640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-13312640157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37790.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755326.10.0transcription factor IIIA isoform X2
RefseqXP_014755327.10.0transcription factor IIIA isoform X2
RefseqXP_024314639.10.0transcription factor IIIA isoform X2
RefseqXP_024314640.10.0transcription factor IIIA isoform X2
SwissprotQ84MZ42e-86TF3A_ARATH; Transcription factor IIIA
TrEMBLI1HMH70.0I1HMH7_BRADI; Uncharacterized protein
STRINGBRADI2G37790.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.18e-90transcription factor IIIA