PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37383.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 657aa    MW: 75378.2 Da    PI: 8.743
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37383.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.46.1e-1545124190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ evGF +r  +s+++ r+g  t++++vC  +g++++++ +          +r+ C a +++++++d+ w v   + +HnH+l+
  Bradi2g37383.2.p  45 DFYNLYSWEVGFGIRYGNSNTN-RHGYRTSQDLVCHTQGSPQKSRGE---------GSRCACPAIMRMHRSDDHGWSVVLHRADHNHHLS 124
                       6*****************9998.77779************9998776.........99*****************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1145124IPR004330FAR1 DNA binding domain
PfamPF105513.8E-26246338IPR018289MULE transposase domain
PROSITE profilePS509669.161510545IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
SCVGSPREIG AVENALRNTP ALGLGKHIFE PVIGTVFDSL AEAYDFYNLY SWEVGFGIRY  60
GNSNTNRHGY RTSQDLVCHT QGSPQKSRGE GSRCACPAIM RMHRSDDHGW SVVLHRADHN  120
HHLSGTCGEK MQCNSHRRID QATKDTVKHF RENNISLSKV HYILGSMNGS MDTLPFTKKA  180
PHIVCQKVNR EQRDDDMKKT TDLFRKMHDA DPDFAFRLQL DQEGRVVNLI WTSGRSRRQY  240
SCFGDVVIFD TTYTTNRYKM PFGLFVGVKI HYQTVIFAGI LMREETIEGF NWAFAEFVSL  300
MGGKPPVTML TDQCRAMEVA IGMTLPGMRH RWCKWHVFRK AKEELGGIDS KKNGFKQAFN  360
NAINEMLRVD EFEKAWGELK WAKPFFKDKY CGRMTSTQRV ESANHMLKVY VPKHSSMNKF  420
VSQYDKLRKD RNEAEDSEEH MNNQATGCAR GGWPIERHAS KIYTMVVMRH FKDELVKGQS  480
FIPKELEAGK LYDLQHAYAE HKPSWSRSSF IVRIEDDEHY HCECGLYPHA GMLCGHVIWL  540
MIHLGVRRVP DCHIMKRWTK NGRDLPDVLF DGGSGDLRPA LPRSLMQNLM RVIVLELLKM  600
GNKSDEASRI VMKHVAAAKC ELRNTEMETP PVYYSRSRWS TGVECTKEDL RQCCCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37383.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2DCC50.0A0A2K2DCC5_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-67FAR1-related sequence 5