PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g37111.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 390aa    MW: 41732.9 Da    PI: 6.5134
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g37111.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.57.1e-0868932449
                      HHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF 24 AeELSvLCdaevaviifsstgklyey 49
                      A+ELSvLC+ae a iifs+ gk + +
  Bradi2g37111.1.p 68 ASELSVLCGAELAAIIFSPGGKAFSF 93
                      99*******************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.0176897IPR002100Transcription factor, MADS-box
PfamPF003193.7E-86893IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-86899IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSSRATWFWS TIGVAAALVT LAVTLEEGAE NNGEKNRGNG HGIAVARSGH AHCYGSDDDV  60
EIVGVPHASE LSVLCGAELA AIIFSPGGKA FSFGSPSSTS SSTASSPPSS PTTTTPLLLL  120
LAAEQVRLLR LRRATAVAVE ALVELNRAYG ELRAMMEQEK LRKTRGGGDE EGARGGQVPH  180
HCLLDADPAE LSEAKLVEFK AALMEVKHAV DLNANDMLRE TLATAACNMA PTPPPLAMPM  240
PRLRGSANTV YVVGGSSSGN NNGGFTNSVY EVSGFSSGNS NNGGGLAMEE MMQMDNMLQQ  300
VDLMGHTFLR RCREWAKSLL SRRPQNFRRH RERASFLRSR ITWTLHRKTS ALTAASSSPT  360
VASSAHHPAE EEEEEEEEEE KKKKSICLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g37111.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693418e-32KF469341.1 Brachypodium distachyon MADS-box transcription factor 47 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754099.15e-44agamous-like MADS-box protein AGL23
TrEMBLA0A2K2DC860.0A0A2K2DC86_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761