PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g36810.2.p
Common NameBRADI_2g36810
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 650aa    MW: 76148.4 Da    PI: 8.0695
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g36810.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.91.4e-171094190
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      +fY+ YAk+ GF v++++ ++  ++++    t+ Cs++gk++ ++k+   + +++++tr++C ak++  ++  +k+++t++ l+HnH+ +
  Bradi2g36810.2.p 10 RFYKGYAKTKGFGVVRRTARHG-DDRKLNYFTLACSRQGKAQYSSKN---SFNPNPSTRMQCLAKVNFARH-GEKFCITSVTLDHNHPTS 94
                      5****************99998.77779***************9999...99****************999.9**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-141094IPR004330FAR1 DNA binding domain
PfamPF105511.0E-37215309IPR018289MULE transposase domain
PROSITE profilePS5096610.126509545IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-5515541IPR007527Zinc finger, SWIM-type
SMARTSM005757.2E-5520547IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MFDSEDDAIR FYKGYAKTKG FGVVRRTARH GDDRKLNYFT LACSRQGKAQ YSSKNSFNPN  60
PSTRMQCLAK VNFARHGEKF CITSVTLDHN HPTSPSKSRF LRCHKKLDLH AKRMLELNDQ  120
AGIRMNKNFG SLVMEAGGYE QLEFSEKECR NYLQEKRRLK LGAGDAHAVY KYFLRMQSKD  180
PDFFHVMDVA EDGRLRNVFW ADARSRATYE SYWDVITFDT TYLTKKYSMP FAPFVGVNHH  240
GESVLLGCGL LSNEDTETFV WLFKSWLCCM SNKAPNAIIT DQCKAMQNAI EEVFPQARHR  300
WCIWHIMKKI PEKLSGYEKY ENIKYTMSNA VYDSLTKHDF DEAWLKMIKK YELQDNEWLA  360
GLYSNKYRWV PAYVKDTFWA GMSSTQRSES VNAFFDGYVN ARTTLKQFVE QYENALRDKV  420
EKENKADSKS FQEVIPCITH YDFERQFQET YTNAKFKEFQ EQLRGKIYCY PTQVNKEGSL  480
FTFRVREDRK IFFEGEDGEI KDKRIISEFT VLFDQGECDV QCACRRFEFR GILCSHILSV  540
LALMEITEVP SRYILQRWDF KRKHTFIKCS YDDMLNTPLV QRYDSLCKRS HEVAENGAES  600
DALYALVMDG LGQLQIKIDA RRASQEVQEE DQTKKHEETM SNKEKIQEI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g36810.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314597.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2K2DC790.0A0A2K2DC79_BRADI; Uncharacterized protein
STRINGBRADI2G36810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-130FAR1 family protein