PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g36774.1.p
Common NameBRADI_2g36774, LOC104583237
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 298aa    MW: 32072.8 Da    PI: 6.1523
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g36774.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.9e-131049241
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                       ien+s+r++t  +R++ + KK +E+S+LCd+ ++++++ 
  Bradi2g36774.1.p 10 YIENESKRKTTMKRRLKSLVKKVSEISILCDVMALLVVYR 49
                      69***********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.278148IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-15175IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-8161IPR002100Transcription factor, MADS-box
CDDcd002662.13E-16284No hitNo description
PRINTSPR004049.5E-5323IPR002100Transcription factor, MADS-box
PfamPF003198.0E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MARGVVRMEY IENESKRKTT MKRRLKSLVK KVSEISILCD VMALLVVYRP GEQQPAAVWP  60
PTAAEAIAVA GEYKSLNSEK LKKPLDRVGF ARQQVEKERT RLLNFHRASE TRSIIFGLFF  120
RYIDGLNLQG LTETPELEGQ LGNLTAHGAV DVQCQLQSTL RAVSDRLRWK RSGSTSAPPP  180
QQQGMLPPAE LEAPVAPQPQ QVGMVDNFIV APPAGPDAVP VVPLPPAAAP MAPMEMDPPH  240
NGADDASMGM ILDVLKDYDG AGNGSVLPNP EEVHDALVRT GILAAPPPPN GDSASNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g36774.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233354.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3J4I90.0A0A0Q3J4I9_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2921224
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.11e-15M-type_MADS family protein