PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g35727.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 621aa    MW: 72168.3 Da    PI: 8.4291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g35727.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.5e-1567146190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF +r  ks+ + +++   +++  C ++g++ +++++         +tr+gC a++++ +++dg w++++ + eHnH+l+
  Bradi2g35727.1.p  67 SFYNLYSWEIGFGIRYGKSRLNVHKK-KCMQEILCGCSGQPLKDNSR---------STRCGCGAMIRLLRTTDGGWYISEHRAEHNHPLS 146
                       5*****************99995555.6778999*****99987655.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1167146IPR004330FAR1 DNA binding domain
PfamPF105511.7E-27253348IPR018289MULE transposase domain
PROSITE profilePS509669.854539575IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
FCLNSICTGL NNLNRVRVAD SSEERKTNPD KPTALENTIR SYIENKRPMV VDPSVGTTFD  60
SLDEAYSFYN LYSWEIGFGI RYGKSRLNVH KKKCMQEILC GCSGQPLKDN SRSTRCGCGA  120
MIRLLRTTDG GWYISEHRAE HNHPLSSTCG EKLHWQSHRH IDRHAKDLVY NRNFFGGMES  180
IPFTKRSLRS LCGKISREQS DKDAMKTMDV FGKMMDEDPD FKYTVQLDED SRMKTLLWTS  240
GNCIDKYACF GDVITFDTTY RTNLYDMPFG LSVGVNNHFQ SIILGGVLMR DEKEESFRWV  300
FREFMRLVGG NENHPKTILT DQARAMELAI AEELPNTKHR WCKWHVLKKA KECLGAVYGK  360
RSSFRAEFHH LVSELYTEEE FELGWASMLE KHGLQKQPFL TQIYEVRQKW AIPYFRDTFC  420
AKMTSTQRSE SANHMLKGYI PPGCSMHLFV KQYAKLQFDR DMEESYQEKR TALSGVVLKS  480
NLPIERHAGK IYTRNMFEQF GECLYESGHY LVDEVEAGRL YTARHSRSGS REQWCKVLFQ  540
VKVDRASEEF ECECGFFSHA GLQCPHVLKV LIHLGYEEIP GRYIMKRWTR DARDILPKHL  600
RRYQKDIGNN GLLFHSSWLR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g35727.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169825.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DBZ70.0A0A2K2DBZ7_BRADI; Uncharacterized protein (Fragment)
STRINGEMT285400.0(Aegilops tauschii)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-82FAR1-related sequence 5