PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g35463.1.p | ||||||||
Common Name | BRADI_2g35463 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 422aa MW: 45293.4 Da PI: 6.4506 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63 | 5.8e-20 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l+ av+q+G + W++Ia++++ gR +kqc++rw ++l Bradi2g35463.1.p 106 KGTWTKEEDDMLKAAVNQHGERKWALIAKHLP-GRIGKQCRERWINHL 152 799*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++ Ed+ lv+a+k G++ W+ Iar+++ gR+++++k++w+ Bradi2g35463.1.p 158 KDPWSEAEDLELVNAHKICGNK-WSVIARRLP-GRSENNVKNHWN 200 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.566 | 101 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-19 | 105 | 154 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.36E-30 | 105 | 199 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.3E-18 | 106 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-27 | 107 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-17 | 108 | 152 | No hit | No description |
SMART | SM00717 | 1.3E-13 | 157 | 205 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.976 | 157 | 207 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.5E-14 | 158 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 160 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.20E-12 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MAAGNEFFMD LELAAAMDRA VAGNYNYFNL ASSGLGGGVS AAQFFPINPA AQAHAGSAAH 60 GGHGAMAAPA TFGFGFGGGA LPVAAVAAPA PPLPPPAAAE DVEQLKGTWT KEEDDMLKAA 120 VNQHGERKWA LIAKHLPGRI GKQCRERWIN HLHPDIKKDP WSEAEDLELV NAHKICGNKW 180 SVIARRLPGR SENNVKNHWN ATRRGLNAKR SLKKRSSERQ PAPGRLSYLA HYIKTIHPPP 240 PSSTAASLSP PPPPEQENEE QQLQAPQVDA VEEEQDPAAG NGENSGSPTG MLGDEFSYYF 300 THMQVPQQQV QQRQMMNYNI SYNNVYPLLT AEDYQMGLNR TYAQQQVAQD RGSSSNNARL 360 DGVLMGNNAV GGGGFSSYGY GGGVGPSSVA GQEVNVAQFA AEPGQYQVFN LEDHLTRFPS 420 I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-39 | 105 | 202 | 6 | 103 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g35463.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314583.1 | 0.0 | transcription factor MYB73-like | ||||
TrEMBL | A0A0Q3J3W1 | 0.0 | A0A0Q3J3W1_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-44 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g35463.1.p |