PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g35057.1.p
Common NameBRADI_2g35057, LOC100845583
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 155aa    MW: 17076 Da    PI: 9.0959
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g35057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55.2e-202458135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+tt+Tp+WR+gp g+++LCnaCG++yrkk++
  Bradi2g35057.1.p 24 CVECRTTTTPMWRSGPTGPRSLCNACGIRYRKKRR 58
                      ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-161876IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-132058No hitNo description
Gene3DG3DSA:3.30.50.101.8E-152259IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.9E-182458IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.5452454IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
CDDcd002022.42E-122459No hitNo description
SuperFamilySSF819956.28E-563117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDSPHHKAIG VAAAAAAEGG RMCCVECRTT TTPMWRSGPT GPRSLCNACG IRYRKKRRQE  60
LGLDNKQLQS QPQQQQEQQQ HQQQEQQQQQ QEQQQHQQQE DHSEPTSAVK DSSSSPSKTS  120
KLQVVKKRRV SMGVEEAASL LMALSSSSTP TLHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g35057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566530.11e-108GATA transcription factor 17
TrEMBLI1HLM11e-107I1HLM1_BRADI; Uncharacterized protein
STRINGBRADI2G35057.11e-107(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.17e-19GATA transcription factor 23