PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g34670.1.p | ||||||||
Common Name | BRADI_2g34670, LOC100839195 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23536.1 Da PI: 7.5496 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a +++G + Wk+I + + ++t q++s+ qk+ Bradi2g34670.1.p 25 RERWTAEEHDRFLHALNLFGRD-WKRIEALVA-TKTSVQIRSHAQKF 69 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.64E-17 | 19 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.16 | 20 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-10 | 24 | 72 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.6E-17 | 24 | 72 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 25 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.0E-12 | 25 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-9 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MQALSSASTI GRKKLRKPYT ITRPRERWTA EEHDRFLHAL NLFGRDWKRI EALVATKTSV 60 QIRSHAQKFF LKAHKFGLAA CLPPPLHPRR SAALLQQPQP DNIDMQVPSM EECHRPRASP 120 EYLCPDLDGA WLDQDGTPIA IELPLSPDDL RFAQVYRFVG DFFGADDATA AANVPVEARL 180 WCLLLQGMDP LVVDTILLVL SNLQANLFA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g34670.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566512.2 | 1e-154 | protein REVEILLE 6 | ||||
TrEMBL | A0A2K2DBT5 | 1e-152 | A0A2K2DBT5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G34670.1 | 1e-153 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g34670.1.p |
Entrez Gene | 100839195 |