PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g34600.1.p | ||||||||
Common Name | BRADI_2g34600, LOC100837065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 24660.2 Da PI: 10.3064 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.3e-11 | 41 | 86 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+e+ErrRR+riN +++Lr+++P a ++Ka+ L +v+ +k+L Bradi2g34600.1.p 41 VHSEAERRRRERINAHLATLRRMIPDA-----SQMDKASLLASVVNQVKDL 86 59************************9.....6899999999999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.716 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-12 | 41 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 41 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 41 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-10 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.7E-5 | 127 | 178 | No hit | No description |
SuperFamily | SSF55021 | 1.14E-5 | 127 | 184 | No hit | No description |
CDD | cd04873 | 1.98E-6 | 131 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGGGVIRDRL MATTCQPPTA APEVSSSSGR SSTEMRRSLK VHSEAERRRR ERINAHLATL 60 RRMIPDASQM DKASLLASVV NQVKDLKRKT TARTTTQAAA AAPIPPEANE VTVRCCCAST 120 GGDRATYVRA TVSCEDGPGL LAGLAGAFRG LGLRALRAEV ASLGGRAHHE FLLRKEEEDG 180 DLGAGVRLME AAVRQALAEV AFPEMARGGS GGSWSKRQRL LEARCSVMYS V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 50 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g34600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110619 | 5e-38 | AK110619.1 Oryza sativa Japonica Group cDNA clone:002-168-H12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566506.1 | 1e-166 | transcription factor bHLH30 | ||||
TrEMBL | I1HLG4 | 1e-164 | I1HLG4_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G34600.1 | 1e-165 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3347 | 36 | 78 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-16 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g34600.1.p |
Entrez Gene | 100837065 |