PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g32910.1.p
Common NameBRADI_2g32910, LOC100824190
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30521.3 Da    PI: 9.2414
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g32910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-314494151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Bradi2g32910.1.p 44 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 94
                      79***********************************************95 PP
2K-box102.84.5e-341122084100
             K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       s++   ++e +a+++qqe+akL+ +i nLq+++R l+Ge++ ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n +Lr
  Bradi2g32910.1.p 112 SNT-GtVAEINAQHYQQESAKLRHQITNLQNSNRTLIGESMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNDNLYLR 203
                       333.349999*********************************************************************************** PP

             K-box  96 kklee 100
                       +k++e
  Bradi2g32910.1.p 204 SKVAE 208
                       **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.883696IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-423695IPR002100Transcription factor, MADS-box
CDDcd002652.53E-4437110No hitNo description
SuperFamilySSF554557.59E-3337109IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003892IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-323858IPR002100Transcription factor, MADS-box
PfamPF003191.0E-264592IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-325873IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-327394IPR002100Transcription factor, MADS-box
PfamPF014861.4E-25121206IPR002487Transcription factor, K-box
PROSITE profilePS5129714.531122212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQILKEQLAT PSTGIMVKES DSPGSGSGSA GASEKMGRGR IEIKRIENTT NRQVTFCKRR  60
NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY EYSNNSVKAT IERYKKATSD TSNTGTVAEI  120
NAQHYQQESA KLRHQITNLQ NSNRTLIGES MATMSHRDLK QLEGRLDKGL GKIRARKNEL  180
LCAEIEYMQR REMELQNDNL YLRSKVAENE RGQQQTLNMM GAASTSDQYE QNMIHCDPRN  240
FLQFNIMQQP QYYQQQEDRK AYDSVER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2036104169Myocyte-specific enhancer factor 2B
1tqe_Q3e-2036104169Myocyte-specific enhancer factor 2B
1tqe_R3e-2036104169Myocyte-specific enhancer factor 2B
1tqe_S3e-2036104169Myocyte-specific enhancer factor 2B
5f28_A5e-2036104169MEF2C
5f28_B5e-2036104169MEF2C
5f28_C5e-2036104169MEF2C
5f28_D5e-2036104169MEF2C
6c9l_A3e-2036104169Myocyte-specific enhancer factor 2B
6c9l_B3e-2036104169Myocyte-specific enhancer factor 2B
6c9l_C3e-2036104169Myocyte-specific enhancer factor 2B
6c9l_D3e-2036104169Myocyte-specific enhancer factor 2B
6c9l_E3e-2036104169Myocyte-specific enhancer factor 2B
6c9l_F3e-2036104169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g32910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693130.0KF469313.1 Brachypodium distachyon MADS-box transcription factor 18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288321.10.0MADS-box transcription factor 58-like
SwissprotQ2V0P11e-148MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLI1HKZ20.0I1HKZ2_BRADI; MADS-box transcription factor 18
STRINGBRADI2G32910.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-100MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]
  4. Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
    Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
    Plant Sci., 2012. 183: p. 183-9
    [PMID:22195592]
  5. Yun D, et al.
    OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
    Mol Plant, 2013. 6(3): p. 743-56
    [PMID:23300256]
  6. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]
  7. Yan D, et al.
    Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
    Plant J., 2015. 82(1): p. 12-24
    [PMID:25647350]
  8. Zheng M, et al.
    DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
    New Phytol., 2015. 206(4): p. 1476-90
    [PMID:25675970]
  9. Chen R, et al.
    A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
    Mol Plant, 2015. 8(7): p. 1069-89
    [PMID:25684654]
  10. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]