PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g32740.1.p
Common NameBRADI_2g32740
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 743aa    MW: 84893.2 Da    PI: 9.0374
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g32740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.12.4e-07116185281
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                        Yn Y+ + GF vr  + + + + g   +++ vC+++gk+ +e++         a+  t+C ak+++++++d+ w+++ l
  Bradi2g32740.1.p 116 LYNLYSWKQGFGVRHGRRRIN-MLGYRSMHEIVCQCQGKPGKENT---------ASCCTDCPAKIRLHRTEDHGWYIDPL 185
                       7***************98887.888899***********998755.........5999******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5096610.361551587IPR007527Zinc finger, SWIM-type
PfamPF044340.0013552584IPR007527Zinc finger, SWIM-type
SMARTSM005750.0049562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MFGASFCCRY ECRSKFLITY LCRSVVDLLV MLSAAAEDQR IRSVPTTDLI IHTPVGLLTD  60
VAPRGKAVEG PDGRISPCKT SALERFVKSA GDLDGTETFA PTARMTFDSR QEAYELYNLY  120
SWKQGFGVRH GRRRINMLGY RSMHEIVCQC QGKPGKENTA SCCTDCPAKI RLHRTEDHGW  180
YIDPLARDFV KNLRANSVSI GKIYNILGSS GSGRLVPFWK QALRSLCSSI SQETMKDDLL  240
KTVKLLQEMR SHDPNMILVV DIDEQGRIKT MLWCTGKNRA DHNDFGDAIT FDTTYKTNLY  300
NMPFGLFVGV NNHFQSVIFA GQINLVLLIE YQCQAMRTAI MTAMPNSRHR WCKWHVLKSA  360
KEKLGHVYSK HSGFKKEFHE LVNAVMSPDE FEIGWEQIVD RYDLRNNPYI DRLYENRAMW  420
AKPYFLDVFC AGMTSTQRSE SANSMLKQYI SRSSPMHMFV QQYNNLLSSG RIDEGREEHA  480
TWHKRRVCTS TTPLEANAAQ IYTRTMFDKF KEELYRSGSY VALEDGESRK YSISRAPENN  540
ENTDANIRST YTVEVEGAGE FVSCTCGLFA HVSMLCRHAI KVLIRNDFLR VPEKNVLIRW  600
TVHARQSLGS GSVMVQERRA DEERGFRNNV LTMVASDMVK ETNRHPVFYD IAMRGLCKIR  660
EDLEKMKEVV LVRDENVIDT PKRVAAAGRP STVRPRSRME YVADVKKKTR QVSSLYKPPS  720
SLTEAEGSLT EIIGSERKLL KRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g32740.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3IMF30.0A0A0Q3IMF3_BRADI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-68FAR1-related sequence 5