PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g31887.1.p | ||||||||
Common Name | BRADI_2g31887, LOC100840729 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 926aa MW: 102503 Da PI: 5.5757 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.6e-18 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Bradi2g31887.1.p 50 KGNWTLEEDDILRKAVQTYNGKNWKKIAECFR-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.5 | 3.5e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++++ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Bradi2g31887.1.p 102 KGPWSKEEDDIIIEMVNEHGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.4 | 2.8e-17 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT+eE+ +l++a++ +G++ W+ +++++ gRt++ +k++w+ Bradi2g31887.1.p 154 RDAWTQEEEIRLIQAHQAYGNK-WAELSKYLP-GRTDNAIKNHWH 196 789*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.143 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.9E-18 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-16 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 50 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.86E-14 | 52 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 52 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.85 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.87E-16 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 3.4E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 114 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 153 | 201 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.975 | 153 | 203 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-22 | 156 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.75E-12 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 926 aa Download sequence Send to blast |
MTSDKGRTTK KPAEVSASAL PPSDEEASSA VQKRRLPNGR KTGPARRSTK GNWTLEEDDI 60 LRKAVQTYNG KNWKKIAECF RDRTDVQCLH RWQKVLNPEL VKGPWSKEED DIIIEMVNEH 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP GINRDAWTQE EEIRLIQAHQ AYGNKWAELS 180 KYLPGRTDNA IKNHWHSSVK KKFESYRAEG LLAQLKGLPP VVYPTSLTVD SSSAMIQQNS 240 EGSGLNAVLE VEDSSEFSQS SLANVSCSQV KHVDAALGCH LQVNFCDERA DDSYSLGQEA 300 CYTNTNNVAS ALPETHHQLS ISENDLDKHL QQDFSEEMDL DIGEVPNSSV FTDSQASKEL 360 FQHTQVISML PTVSGYEHNT NATSEADFDN KKGLQSELWE DISFQGILSA PDSISADSFL 420 SPNCQRGLYS VEAAKNFEES LYPLHTFNSS SMTSSAHLQS SATSLPSSFI SSGSASCTPG 480 AKFETNGIPV SLESITCQDV PSDMPIPESR KQQPTDVEQS SLEHTTMGRE ASPIHGESVV 540 GQKKHSEALC YEPPCFPSVE VPFVSCDLLS SSDLPEYSPL GIRELMRSSM NFSTPIRLWS 600 SPTRDMSSDA VLKSAAKSFI CTPSIMKKRQ RELSSPTPDI KFAKKIGAEK DCGNSGMSST 660 RTERSFMDVI EDELLDFISH QNEENLKETT HQGINEENTK RNTLEEGKRC STMNKDTTCD 720 ALSTGILTES NANSLSPPKD VKNPGIQKLN TTAKSLSKEI ISSRSKPTNL VVEKSSPYIN 780 ADYQYVNILA DTPGIKRGLE SPSAWKSPLF TNFQDGFFMS PAGRTFDALG LVKQINEQNA 840 PALEEAHEVL ACGRPQNPCS KENSNKENIE QTIIREHVTS NQPSTVMAEA RILDYNECTT 900 PVKKKEECSI FQRSPTSSYL LKNVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-64 | 50 | 202 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-64 | 50 | 202 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g31887.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231587.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_010231588.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_024315406.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | I1HKU0 | 0.0 | I1HKU0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G31887.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-104 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g31887.1.p |
Entrez Gene | 100840729 |