PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g31850.1.p
Common NameBRADI_2g31850
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 262aa    MW: 26681.4 Da    PI: 5.3168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g31850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003279101123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C++ F++   L  H++ H
  Bradi2g31850.1.p  79 YECVFCKRGFTTAQALGGHMNIH 101
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.87E-677105No hitNo description
PROSITE profilePS5015710.9979106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MASGSEAAGG ASEEAAGVSS PRPDQEAAVS SLKPDQAEAS AAAPGQPVVA GEDEPAAEAP  60
PPSPAPAPAA AAAVARPYYE CVFCKRGFTT AQALGGHMNI HRRDRAKPPS LIRGDPTSTP  120
TSVFVRNLEC YSQQYHPGYE YPLPPVLPVA TQPGSSSNLT MYYRGSAGPA TTTGSAAVVA  180
GEAAGSMNPS SSGTASPREL SLFAAAPHDH DLHLGLGSFH GRAAAGGGEP EEALAAERQG  240
GEPAERDQLD LELRLGRRPR H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g31850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454773e-33AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149613e-33AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233298.11e-143transcriptional regulator SUPERMAN
TrEMBLA0A0Q3MRQ50.0A0A0Q3MRQ5_BRADI; Uncharacterized protein
STRINGBRADI2G31850.11e-142(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Representative plantOGRP1198045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.17e-14C2H2 family protein