PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g31710.1.p
Common NameBRADI_2g31710, LOC100824282
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 868aa    MW: 95608.5 Da    PI: 6.6451
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g31710.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.15.5e-26549600152
            RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       aek+isle++++yFs+++k+AAk+Lgvc+T++KriCR++GI+ WP+R i+++
  Bradi2g31710.1.p 549 AEKTISLEVIQQYFSGSLKSAAKSLGVCPTTMKRICRKHGIPHWPSREISKV 600
                       589**********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.109539620IPR003035RWP-RK domain
PfamPF020426.6E-23552600IPR003035RWP-RK domain
SuperFamilySSF542775.61E-23763855No hitNo description
SMARTSM006664.4E-25772855IPR000270PB1 domain
PROSITE profilePS5174521.29772855IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.6E-24773854No hitNo description
CDDcd064073.75E-30773854No hitNo description
PfamPF005641.3E-16773854IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MDLDSSDGEA WLLDALATPP LFSAAAPLPW LCGDQHYSSL PMDAVSDLDE TPGTRSGESE  60
TAAKKVENMN GKMQVPVSLD DDYSDCSHFM KERLALALSY FKESTDQHLL VQVWIPTKNG  120
DRYVLTTSGH PFLLAQESIK LVQYRAVSMT YAFSVDGENV HDLGLPGRVY KQRVPEWTPS  180
VQYYSSFEYP RLNHAINHNV HGTVALPVFD PSMKSCIGVV ELIMTSKKVN YASEVDKVCK  240
ALEAVNLKST KIVEHPCVQI CNESRQVALV EILEILTVVC EEFKLPLGQT WVPCKYQSLL  300
AHGGVKRSCL SFGGSCMEEV CISTSDVAFH IIDARMWGFR DACVAHHLQK GQGVSGKAFI  360
SGRPCFSKDV SRFSKMEYPL VHYARMFALA GCFSIYLQSA YTGDDYILEF FLPPDCREDD  420
EQKALLQSII VLLRQHLRTL QVAGDKGLNE ACLQVDAVTV MHNEETGNTY VQDLNVGGGI  480
HTLLESDMHG GIHESDNRNH KASTMSKNHL LSHDYSGDKP VAIPSGSGTS DSSLLYKNKK  540
NPVRRRGKAE KTISLEVIQQ YFSGSLKSAA KSLGVCPTTM KRICRKHGIP HWPSREISKV  600
NKSISKLKEV IESAQASESA FGFTSVTAPP FGPASSSYLL DIDKSRQEKT AEVYIPFGNE  660
HKASSSQKSL QNCSPSILIS PQTLLANSVI QIEGDKVTNL RSSSGQHSTN SQTSEGSYPG  720
SQGNGAFVRE SIASTFLEPQ QNLYNSQGFA KDSVRPTVLS PGRMMSPQNS GIVTVKAHYK  780
EDILRFRFPC SGSLRTLKDE VAKRIQIDVI GSFYIKYLDD DHEWVNLTCQ ADLEECMEIY  840
LLSGLNVLRL LVTDNAVILG SSHGSSA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g31710.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753898.10.0protein NLP3
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLA0A0Q3R0L40.0A0A0Q3R0L4_BRADI; Uncharacterized protein
STRINGPavir.Ca00444.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47783660
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein