PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g31180.2.p
Common NameBRADI_2g31180
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 845aa    MW: 96338 Da    PI: 7.9067
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g31180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-1974165289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        Y +YA+  GF +r+++++ + ++ge+ + +fvC+k gk+++ k++       + +r++  ++ tgC+a++k+k++  + + v+k+e+eHnH+
  Bradi2g31180.2.p  74 HYVNYARWNGFGIRIDYQRPT-KSGETSRTQFVCYKVGKNKKAKEDtqrpesVVPKRKRGITEITGCRARMKIKLD-GAAYIVEKFEEEHNHP 164
                       69**************99998.7888****************9999899988888889999999************.9**************9 PP

              FAR1  89 l 89 
                       +
  Bradi2g31180.2.p 165 V 165
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1674166IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31288382IPR018289MULE transposase domain
PROSITE profilePS509668.011570604IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-4579606IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MPGGMNTMGR SAPTINVGAS TLPPEPMLHR STEERADGGE NNEDNDDDAD DGISPPKKPE  60
VNMRFDSIEA AQQHYVNYAR WNGFGIRIDY QRPTKSGETS RTQFVCYKVG KNKKAKEDTQ  120
RPESVVPKRK RGITEITGCR ARMKIKLDGA AYIVEKFEEE HNHPVIKKFD LCKYLRSHRH  180
IPREERQFVK LLHECNLRTS QMMQLLSHLH GTLNDLTYTR TDMANFKAAL RREHTVMDMQ  240
HKLRYFEQLK KEDGDFFYSF EMDDEDKVIN LYWVDGEARR SYKYYSDCIS FDTTYLTNKC  300
NMPCAPFIGI NNHGQSVQFG CGFLRNEDTL SFVWLFKTFL EAMDGIAPVN IITDQDFAMR  360
NGISEVFLDA THRNCRWHIM KKAQEKLGGF MGRNLELRAD FEDCIDNSFT PEEFEWKWNA  420
MIEKYQVHDN EDLAALWENR TSWVPAYFMM NFYPFLQSTQ RSEGFNAVLK RYVSPSNSIF  480
DFAWQYTVLQ QKILGVERQA EAETALTVPK KWGFSTLEEQ VKLIYTRRMF NRFQEKLQLT  540
SSYHCQRTGA TMYEAVSMTG HSGQQDIPWL AADIATCMYS CECCKFDRDG IVCCHILRVM  600
QHEGVRVLPQ HYILKRWTWN ADVALGPHGT QQLNTAQQEM PEDSRKLMRY ATMNKGLSDI  660
AKDACYGQDV TKIVERHMKA MRSELAALKK REEKDARARE AMGMSRRQGL LPEGSTSGAR  720
PEGSVSAAAQ QGSTSEAAPV GSATGTATEG SAAGAREEGR GNTMEDATPS ENVTQEVSAA  780
SNGVGIRDPP MTATKGRPRE RRYKSPLDIE PKAPKKRGRC KICRSAEHDA RTCPQKMANR  840
ATCT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g31180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314049.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_024314050.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_024314051.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A0Q3K7S70.0A0A0Q3K7S7_BRADI; Uncharacterized protein
STRINGBRADI2G31180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5