PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g30800.2.p
Common NameBRADI_2g30800, LOC100837064
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 387aa    MW: 41159 Da    PI: 6.8508
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g30800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26201260258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r +edp + e+tY g+H +
  Bradi2g30800.2.p 201 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDEDPFTYEVTYCGNHSC 260
                       8***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26193260IPR003657WRKY domain
SuperFamilySSF1182904.32E-24197260IPR003657WRKY domain
SMARTSM007747.2E-36200262IPR003657WRKY domain
PfamPF031062.4E-24201260IPR003657WRKY domain
PROSITE profilePS5081121.609201259IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MHVLAPYGAG PPLALVLSYL AGHRESQTEA ASSIVVHGNN VGEMDEALSQ ISEAFRLAGE  60
FMSELPATQN DPAYLADRCH GIAQAYNAAF RMLQPYGGLD AGGPLDFLLL RRSAEEAAAG  120
RSQFLGEPPV QQEPFHVAGA DVLQGARAVA GGPLRRLASS SGSPPPVQPR QGSGRRRRES  180
GQRQTLMVPA QRTGNTELPP DDGYTWRKYG QKDILGSRYP RSYYRCTHKN YYGCEAKKKV  240
QRLDEDPFTY EVTYCGNHSC LTSTTPLLTL PAATVASTTN SPTPTSAGSR LAPDLVMAHA  300
EQPRFAAAPL STSIHLGMNW MPASVQQGIG AGAGEGISSG AQMNVSAAGR DSDYPVLDLA  360
DAMFNSGSSG ASSMDGIFPF HQRRDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20201260968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g30800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878172e-94AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566384.30.0WRKY transcription factor 55
TrEMBLA0A0Q3ILV30.0A0A0Q3ILV3_BRADI; Uncharacterized protein
STRINGBRADI2G30800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-37WRKY DNA-binding protein 55