PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g29960.1.p | ||||||||
Common Name | BRADI_2g29960, LOC100845690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 41650.5 Da PI: 4.7323 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.8e-18 | 130 | 180 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + r r +lg+f tae Aa a+++a+++++g Bradi2g29960.1.p 130 CKFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAACAYDEAARAMYG 180 79*****999.**********8...2.58************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.1E-12 | 130 | 180 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.64E-29 | 130 | 190 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-20 | 131 | 189 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.232 | 131 | 188 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-36 | 131 | 194 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 131 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MTVDQRSVAA APLEIPALQP GRTLGAEANT RSHVSVESIG SCTLPCNECE LSAQQTPKGV 60 APVASILRKK RPRRSRDGPN SVSETIRRWK EVNQQLEHDP EGAKRARKPP AKGSKKGCMQ 120 GKGGPENTRC KFRGVRQRTW GKWVAEIREP NRVSRLWLGT FPTAETAACA YDEAARAMYG 180 PLARTNFTIQ DVPTPAVDIP AVVQRLLPGG STSCESTMTS NHSGIVASSR VLEISSSLKQ 240 SDVGSEHDQR SNQYSSPQAG SSVARSRADD LFEPLEPIAN LPDGEDDGFD IEELLRMMEA 300 DPVEAAEPMV ENSWTGFQDV GANTVVDFDQ QEPSYLDDFN PSMLEGMLQL AEPFPTCISE 360 DRVMFNPGLR DADLSEFFEG L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-14 | 132 | 190 | 3 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g29960.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568656.1 | 0.0 | dehydration-responsive element-binding protein 2B isoform X1 | ||||
Swissprot | Q5W6R4 | 1e-81 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | I1HKG2 | 0.0 | I1HKG2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G29960.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11515 | 30 | 37 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g29960.1.p |
Entrez Gene | 100845690 |
Publications ? help Back to Top | |||
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