PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g27920.1.p | ||||||||
Common Name | BRADI_2g27920, LOC100834608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 17679.9 Da PI: 7.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 39 | 87 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ taeeAa a++ a++ ++g Bradi2g27920.1.p 39 YRGIRRRP-WGRWAAEIRDPRK---GTRVWLGTYATAEEAALAYDVAARDIRG 87 9*******.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.5E-14 | 38 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 38 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 38 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.302 | 38 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 38 | 96 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.10E-29 | 39 | 97 | No hit | No description |
PRINTS | PR00367 | 3.9E-11 | 39 | 50 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MCGGAVIAGF VPEGSSSSSL TGEELTTEKP PAPGRKTAYR GIRRRPWGRW AAEIRDPRKG 60 TRVWLGTYAT AEEAALAYDV AARDIRGAKA KLNFPPAVDH AAVEEAKKRR TKAAAVESSC 120 SSSPLPATST GGGGGGAERL RECMSGLEAF LELENPAGVG EDVDLMFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 39 | 99 | 6 | 67 | ATERF1 |
3gcc_A | 2e-21 | 39 | 99 | 6 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | KKRRTK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g27920.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134348 | 3e-69 | AC134348.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0530H10, complete sequence. | |||
GenBank | AC135929 | 3e-69 | AC135929.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0692D12, complete sequence. | |||
GenBank | AK100184 | 3e-69 | AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence. | |||
GenBank | AK111676 | 3e-69 | AK111676.1 Oryza sativa Japonica Group cDNA clone:J013155B14, full insert sequence. | |||
GenBank | AP014961 | 3e-69 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-69 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568621.1 | 1e-117 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 3e-35 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | I1HK81 | 1e-116 | I1HK81_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G27920.1 | 1e-116 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 9e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g27920.1.p |
Entrez Gene | 100834608 |