PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g26987.1.p
Common NameBRADI_2g26987, LOC100843041
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 414aa    MW: 45286.9 Da    PI: 9.0206
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g26987.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.2e-1773132155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Bradi2g26987.1.p  73 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 132
                       57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1273132IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-1773142IPR016177DNA-binding domain
SMARTSM003801.2E-2474146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1574141IPR001471AP2/ERF domain
PROSITE profilePS5103219.83674140IPR001471AP2/ERF domain
PRINTSPR003674.2E-57586IPR001471AP2/ERF domain
PRINTSPR003674.2E-5122142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MASSNPAVAD AGLQKLEAVA AGEGPAFGAA LAAVAAPEQQ APRRPASARK ERVCTAKDRI  60
SRMTPCAAGK RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQVYL GAYDDEEAAA  120
RAYDLAALKY WGAGTQINFP VSDYTRDLEE MQIISKEDYL VSLRRKSSAF SRGLPKYRGL  180
PRQLHNSRWD ASLGQLLGND YMNLSCGKDV ALHGKFAGSF GLERKIDLTN YIRWWVPKKT  240
RQSDASKAEE VADEIRAIES SAQRTEPYKL PSLGLSSDSK PSSVGLSACS ILSQSDAFKS  300
FLEKSTQLSD ECTFSKEIDE GKVVVSVPAT GHDTSAVNMN MNGLLVQSAP YTLAPVMPTT  360
IKSTWNPADP STDNLFWSNF VLPSSQPVTM ATITTTTFAK NEVSSTDPFK SQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g26987.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3557490.0AK355749.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1025C06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566305.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-103AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0Q3K6S40.0A0A0Q3K6S4_BRADI; Uncharacterized protein
STRINGBRADI2G26987.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-94AP2 family protein