PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g26823.2.p | ||||||||
Common Name | BRADI_2g26823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SRS | ||||||||
Protein Properties | Length: 229aa MW: 23823.2 Da PI: 8.6478 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 192.4 | 1.6e-59 | 6 | 170 | 2 | 152 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaa.krrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 +sg+asC+dCGnqakkdC ++RCRtCCks+gfdC+thv+stW+paa +rr+rq+ + ++a+ + ++sk+ r+l + q+++++++++s Bradi2g26823.2.p 6 GSGGASCNDCGNQAKKDCPYQRCRTCCKSQGFDCTTHVRSTWIPAAsRRRDRQNPAGPNGDDSASGLSPSSSKKARRLL-SCQTTTTNSRTQS 97 57899***************************************97255666666666666777777888888888763.3344444444444 PP DUF702 94 aeskkeletss..........lPeevsseavfrcvrvssvdd.....geeelaYqtavsigGhvfkGiLydqGl 152 ++s+ +++++s lP+ v+++avfrcvrv+ vdd g +elaYq++v+i+Gh+f+G+LydqG Bradi2g26823.2.p 98 TSSR-SFDATStqqeapfrdsLPRYVRAPAVFRCVRVTPVDDgggggGVDELAYQASVTINGHMFRGFLYDQGR 170 4333.2222222458899999*********************54433369**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-53 | 9 | 170 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.4E-26 | 11 | 53 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.8E-21 | 118 | 169 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MASVGGSGGA SCNDCGNQAK KDCPYQRCRT CCKSQGFDCT THVRSTWIPA ASRRRDRQNP 60 AGPNGDDSAS GLSPSSSKKA RRLLSCQTTT TNSRTQSTSS RSFDATSTQQ EAPFRDSLPR 120 YVRAPAVFRC VRVTPVDDGG GGGGVDELAY QASVTINGHM FRGFLYDQGR GNVSVDESSS 180 HAAAVRSISD LHLGTAVSAS SAVPPGVYDA VGSAQLILGG LSYGNTIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g26823.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753858.2 | 1e-161 | uncharacterized protein LOC100841519 | ||||
TrEMBL | A0A0Q3G5A8 | 1e-165 | A0A0Q3G5A8_BRADI; Uncharacterized protein | ||||
STRING | MLOC_59277.5 | 3e-74 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 9e-38 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g26823.2.p |