PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g26342.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 606aa    MW: 71292.4 Da    PI: 8.6244
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g26342.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1743.2e-2324114290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        Yn+YAk+ GF+vr + +++ + ++e ++r+f+Cskeg+r e+    +++ r++ra tr+gCka+l++++e  +g w v++++  HnH+l 
  Bradi2g26342.2.p  24 HYNSYAKSKGFNVRLDDKEYISGTTELKRRRFCCSKEGYRLEKYFVaKDQIREPRALTRCGCKAMLEIQREPgTGLWFVKNFVDVHNHPLD 114
                       6*******************99******************9987655789999*******************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2024115IPR004330FAR1 DNA binding domain
PfamPF105511.7E-35236329IPR018289MULE transposase domain
PROSITE profilePS509668.976504543IPR007527Zinc finger, SWIM-type
SMARTSM005750.0082518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEEMEEYHMM VSQMFGSVEE GYEHYNSYAK SKGFNVRLDD KEYISGTTEL KRRRFCCSKE  60
GYRLEKYFVA KDQIREPRAL TRCGCKAMLE IQREPGTGLW FVKNFVDVHN HPLDPKQSPF  120
LRSHRRLNNA QKADAVEYGL GGLRTCEIME VMEKHHGGYD QVGFVSRDLY NFFAKYKKKR  180
ILGRDAEFVL NHMRAQVERD AEFFFKYSTD DEGHLRNIFW ADSQSQIDYE AFGDLVVFDS  240
TYRVNRYNLP FVPFIGVDHH RSTIVFGVGI VSDETVSSYE WLLQSFLEVM SHKNPRSVIT  300
DGDAAMRKAI KKVMPRTDHR LCSWHIEQNM IRHLRNPMLR DFRKLIYRKM GVYEFERSWA  360
QFKEKYEITE QSAWMSRMYK LRKRWSAAYT NGRYFLGMLH NHLDRKMSLV DLVEHSEHCM  420
SRIRRNEDEL DAKAANSVPF TRIDANPLEK NAARIYTPKM FKKFRYCIRR SSAWEIEEHT  480
ERDGLVTYRD ALKEGAEGGS RHVFFVECSF HGSSMNGIFC GCRKLECEGV PCSHIFSVLS  540
FLGVETIPLC CVWIRWTMQA KAAFVSETNG NTHVWSEEMG RYRQMRNKAS VALFKVVEWA  600
EEAKHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g26342.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167965.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3IKU70.0A0A0Q3IKU7_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G21270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-93FAR1-related sequence 5