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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Bradi2g26320.1.p | ||||||||
| Common Name | BRADI_2g26320, LOC100827263 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 315aa MW: 33279.5 Da PI: 9.5219 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 66 | 3.9e-21 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
krien+ rqvtfskRr g++KKA+ LSvLC++e a +ifs+ gk + +
Bradi2g26320.1.p 17 KRIENQQARQVTFSKRRFGLFKKASSLSVLCGVELAAVIFSPGGKAFSF 65
79******************************************98776 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 24.992 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 4.5E-29 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.74E-34 | 10 | 76 | No hit | No description |
| PRINTS | PR00404 | 5.0E-19 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 5.62E-25 | 12 | 84 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.8E-23 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-19 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-19 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 315 aa Download sequence Send to blast |
MPPRRRPNLG WQKIETKRIE NQQARQVTFS KRRFGLFKKA SSLSVLCGVE LAAVIFSPGG 60 KAFSFGSPSV DAVINRLIAT FFANNNNANT APAAAGGGGA GSSSSAPAAT GGGRGSSSAP 120 AAEALVELNK VYEELRAMME EEKRRKERAE EEMKRERSRW QYWRPRRFAN SVYEVGGSSG 180 GNNNGGFANN IYEVSGSSGG NNNGGFANSV YEVGGSSVGN NNGGAAAMEE MMQQLYLMGQ 240 IRPLPPPGMG QIPPPPPVGM GQIPPFLETM DLPPPPGMGQ LSPFPGTMYL PLPELGPDGG 300 FFLPGDGFFG PPPY* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 3mu6_A | 1e-14 | 10 | 79 | 1 | 70 | Myocyte-specific enhancer factor 2A |
| 3mu6_B | 1e-14 | 10 | 79 | 1 | 70 | Myocyte-specific enhancer factor 2A |
| 3mu6_C | 1e-14 | 10 | 79 | 1 | 70 | Myocyte-specific enhancer factor 2A |
| 3mu6_D | 1e-14 | 10 | 79 | 1 | 70 | Myocyte-specific enhancer factor 2A |
| 6byy_C | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6byy_D | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6bz1_A | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6bz1_B | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6bz1_C | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6bz1_D | 1e-14 | 9 | 74 | 1 | 66 | MEF2 CHIMERA |
| 6c9l_A | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-14 | 9 | 74 | 1 | 66 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Bradi2g26320.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KF469341 | 0.0 | KF469341.1 Brachypodium distachyon MADS-box transcription factor 47 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001304796.1 | 0.0 | MADS-box protein JOINTLESS-like | ||||
| TrEMBL | I1HJR6 | 0.0 | I1HJR6_BRADI; MADS-box transcription factor 47 | ||||
| STRING | BRADI2G26320.1 | 0.0 | (Brachypodium distachyon) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36590.1 | 9e-24 | M-type_MADS family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Bradi2g26320.1.p |
| Entrez Gene | 100827263 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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