PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g26120.1.p

Common Name

BRADI_2g26120, LOC100825401

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 457aa MW: 53623.3 Da PI: 6.4168

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g26120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.2e-22	234	322	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +f+ Y ++vGF v+k++s++s+++g++ + +f+C+k+ + +++++ +++rr+++ +rt+Ck +++kk+ d kw+v++++l+HnH+lap Bradi2g26120.1.p 234 RFFTVYERRVGFAVKKDSSYRSRKTGQVQRIEFTCNKHRGHINTDSA-TRQRRSNKIERTECKVLMRLKKD-DCKWVVYSVNLQHNHDLAP 322 59*********************************9988888888.89****************9.9*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-19	234	322	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDIMGSHLVD GVIGQNSQVM DRVSFRTKQF TKPRTLELFV ESFVMRRRIR EETQSIQELE 60 MVQSMLDGTD THVQHGGVDS ASQEQDKTIM GRQENEQRQE NMGAPDAAVN RRKPDCAPMP 120 FDLNANLFEN GNEEEEYLER SHDDVEQNSE VQFPEQSYEH AEMTDEATNH VQFADQARDD 180 QGIEEGLFPD PVTNEEKEMD RMFEADNYPA IHEIIQARAP QDGMVFDSLE EAFRFFTVYE 240 RRVGFAVKKD SSYRSRKTGQ VQRIEFTCNK HRGHINTDSA TRQRRSNKIE RTECKVLMRL 300 KKDDCKWVVY SVNLQHNHDL APSQWLVRFM SCHKKMSPAD KHLVEILQES RVPPRKVMSI 360 FRSMRGSFRN IPFDAKYVSN MMYQERLKHK NRDIKELLQK FKDVQKKTKS FYYTLQIDED 420 NNVRSVFWTD VMGRADYKMF GQFLSFTTYT ICPLHH*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDIMGSHLVD GVIGQNSQVM DRVSFRTKQF TKPRTLELFV ESFVMRRRIR EETQSIQELE  60
MVQSMLDGTD THVQHGGVDS ASQEQDKTIM GRQENEQRQE NMGAPDAAVN RRKPDCAPMP  120
FDLNANLFEN GNEEEEYLER SHDDVEQNSE VQFPEQSYEH AEMTDEATNH VQFADQARDD  180
QGIEEGLFPD PVTNEEKEMD RMFEADNYPA IHEIIQARAP QDGMVFDSLE EAFRFFTVYE  240
RRVGFAVKKD SSYRSRKTGQ VQRIEFTCNK HRGHINTDSA TRQRRSNKIE RTECKVLMRL  300
KKDDCKWVVY SVNLQHNHDL APSQWLVRFM SCHKKMSPAD KHLVEILQES RVPPRKVMSI  360
FRSMRGSFRN IPFDAKYVSN MMYQERLKHK NRDIKELLQK FKDVQKKTKS FYYTLQIDED  420
NNVRSVFWTD VMGRADYKMF GQFLSFTTYT ICPLHH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g26120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566270.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1HJP2	0.0	I1HJP2_BRADI; Uncharacterized protein
STRING	BRADI2G26120.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-27	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi2g26120.1.p
Entrez Gene	100825401