PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g25270.3.p

Common Name

BRADI_2g25270, LOC100832952

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 265aa MW: 26928 Da PI: 7.8892

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g25270.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.4	1.2e-43	40	138	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ Bradi2g25270.3.p 40 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLHELSPFQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 132 7******************************************************************************************** PP DUF260 94 lallke 99 l++++ Bradi2g25270.3.p 133 LSRARF 138 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.634	39	140	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-43	40	136	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MASSSASSLP GSVITVASSA AAAALSGGSA GAGAGATGSP CAACKFLRRK CQPDCVFAPY 60 FPPDNPQKFV HVHRVFGASN VTKLLHELSP FQREDAVNSL AYEADMRLRD PVYGCVGVIS 120 VLQHQLRQLQ QDLSRARFEL AKYQQQAAAA AAAAADFGGS ANNNCTQNFI NISHHHSTTA 180 IGAGVVGVGG GFGHGHDQFA AVQMLARSYE GDSGAIARLS VNGGSGYDFG YSSAMGGVGG 240 PVSGLGPFLK PGTAGGDERH TAAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-53	38	143	9	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-53	38	143	9	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g25270.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134933	1e-136	AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBank	AC137617	1e-136	AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBank	AP014961	1e-136	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568446.1	0.0	LOB domain-containing protein 6
Refseq	XP_010231373.1	0.0	LOB domain-containing protein 6
Refseq	XP_024314121.1	0.0	LOB domain-containing protein 6
Refseq	XP_024314122.1	0.0	LOB domain-containing protein 6
Swissprot	Q32SG3	1e-103	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	I1HJD8	0.0	I1HJD8_BRADI; Uncharacterized protein
STRING	BRADI2G25270.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	4e-49	LBD family protein

Link Out ? help Back to Top
Phytozome	Bradi2g25270.3.p
Entrez Gene	100832952