PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g24400.1.p | ||||||||
Common Name | BRADI_2g24400, LOC100842957 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 25929.3 Da PI: 8.5628 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Bradi2g24400.1.p 14 KGAWTKEEDQRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ Edel+++++ +lG++ W++Ia ++ gRt++++k++w+++ Bradi2g24400.1.p 67 RGNFSDHEDELIIRLHGLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.698 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.26E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.157 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.84E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF SDHEDELIIR LHGLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLSRG 120 MNPRTHRPLT TPTTAPLQPA AMLALARPPQ AESSSDGGSS GTGEPPRCPD LNLDLSVGPP 180 AADTESTTTS QVCLCYHLGF RGGEACSCRL HQADDDTSSG FRYFRPLEQG QYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g24400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368728 | 1e-156 | AK368728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078M17. | |||
GenBank | JF951903 | 1e-156 | JF951903.1 Triticum aestivum clone TaMYB19 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003568394.1 | 1e-174 | myb-related protein Zm38 | ||||
Swissprot | P81393 | 5e-91 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | I1HJ48 | 1e-172 | I1HJ48_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G24400.1 | 1e-173 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-81 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g24400.1.p |
Entrez Gene | 100842957 |
Publications ? help Back to Top | |||
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