PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g24175.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 392aa    MW: 41388.6 Da    PI: 6.3145
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g24175.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-20189238255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Bradi2g24175.2.p 189 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 238
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.49E-19189248No hitNo description
PROSITE profilePS5103225.686189246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-33189247IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22189247IPR016177DNA-binding domain
PfamPF008471.3E-13189238IPR001471AP2/ERF domain
SMARTSM003801.7E-36189252IPR001471AP2/ERF domain
PRINTSPR003671.3E-11190201IPR001471AP2/ERF domain
PRINTSPR003671.3E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MFSFSAFALS SHLNSTCIYS PKSARPVWLI RRVWYALKSN YDPHCCMRAE VALQAWYYEM  60
AADPHRLGGG RRLARYDEED GGGDDDRGEL EAMASSVLSG EYQAQEMSTM VSALARVVSG  120
GDDDRWAGLP YGWAMGGAGR SYSGGAPTPD QLATGLQERR SPTAMGEEQQ QLPTYGGEPA  180
SAEQQPGRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFE TAEAAARAYD EAALRFRGSR  240
AKLNFPEDAR LTAPTPAPAP AAAASLASSP TMSSSASSTS TPYAAAVSDY LQYQMLLHGG  300
GGGSGVGGFP PYYGGSVSSS SAGAYSFPES SVTVASVPSS ASSASGYGAA AAAEHGAAQW  360
AWPEAAPWTY PATTGSWSAS SQYPPPPHHP Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23187246363ATERF1
3gcc_A1e-23187246363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g24175.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721502e-81AK372150.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231329.20.0ethylene-responsive transcription factor ERF110
TrEMBLA0A2K2DA680.0A0A2K2DA68_BRADI; Uncharacterized protein
STRINGBRADI2G24170.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-27ethylene response factor 110