PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g23978.1.p | ||||||||
Common Name | BRADI_2g23978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 220aa MW: 23815.6 Da PI: 6.3688 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 154 | 198 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G g+W+ I+r k+Rt+ q+ s+ qky Bradi2g23978.1.p 154 PWSEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 198 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.243 | 42 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 0.44 | 44 | 96 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 47 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.01E-10 | 47 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00388 | 47 | 85 | No hit | No description |
PROSITE profile | PS51294 | 18.366 | 147 | 203 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-17 | 149 | 202 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-16 | 151 | 201 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.4E-10 | 151 | 201 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-11 | 153 | 197 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.81E-10 | 154 | 199 | No hit | No description |
Pfam | PF00249 | 3.8E-11 | 154 | 198 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAFYGGMGMG MGAGQGASSS SQAPGQQQQP MTMMPAAPPM PMPSVRPWTR AEDKVFESAL 60 VAFPEHVQNR WAYVASQLPG RTAQEAWEHY QALIEDVDLI EAGFIETPES WDEEEEAAAA 120 AAAATTAAAA AAASAAAGGG ARRGRGEERR RGVPWSEEEH RLFLEGLEKY GRGDWRNISR 180 WSVKTRTPTQ VASHAQKYFL RLAGKGDTKR KSIHDITNP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g23978.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367954 | 6e-56 | AK367954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065H11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566206.3 | 1e-159 | transcription factor DIVARICATA | ||||
TrEMBL | A0A2K2DA65 | 1e-157 | A0A2K2DA65_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G23980.1 | 1e-109 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-40 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g23978.1.p |