PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g23967.1.p

Common Name

BRADI_2g23967, LOC100831034

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 265aa MW: 29161.6 Da PI: 7.1505

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g23967.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.8	1.2e-41	4	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppG+rF Pt+eelv +yL++k++g + ++e+vi+ +d+++++Pw+Lp+ + ++ + w++F+ r+ ++a+g r++r+t sgyWka g+ Bradi2g23967.1.p 4 LPPGYRFYPTEEELVRFYLRHKLDGGHraRDIERVIPVADVCSLDPWQLPEahRGVGGGEPWFYFCARQDREARGGRPSRTTPSGYWKAAGTP 96 79********************99977778889***********52333347789**************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +g+ +g+kkt+vfy+grap g+kt+W m+eyr+ Bradi2g23967.1.p 97 GLVYSVqlNGHPIGTKKTMVFYTGRAPAGTKTKWKMNEYRA 137 998889999**************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-48	3	171	IPR003441	NAC domain
PROSITE profile	PS51005	47.306	4	171	IPR003441	NAC domain
Pfam	PF02365	1.9E-23	5	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGELPPGYRF YPTEEELVRF YLRHKLDGGH RARDIERVIP VADVCSLDPW QLPEAHRGVG 60 GGEPWFYFCA RQDREARGGR PSRTTPSGYW KAAGTPGLVY SVQLNGHPIG TKKTMVFYTG 120 RAPAGTKTKW KMNEYRALDH DVGAAAAAPA APNPFALHPR SEFTLCRLYT KSGCPRQFDR 180 RPCTGAAAGS SAEDPMSSSF AALGNEEDEV GRGQKRKRQA APNDGASSSS AACFMQQRQT 240 HGGADEEEEL ADYMIDWAEF LDWI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-30	4	177	20	174	NAC domain-containing protein 19
3swm_B	1e-30	4	177	20	174	NAC domain-containing protein 19
3swm_C	1e-30	4	177	20	174	NAC domain-containing protein 19
3swm_D	1e-30	4	177	20	174	NAC domain-containing protein 19
3swp_A	1e-30	4	177	20	174	NAC domain-containing protein 19
3swp_B	1e-30	4	177	20	174	NAC domain-containing protein 19
3swp_C	1e-30	4	177	20	174	NAC domain-containing protein 19
3swp_D	1e-30	4	177	20	174	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g23967.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP099084	1e-124	FP099084.1 Phyllostachys edulis cDNA clone: bphyem111h11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003568356.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	4e-59	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	I1HIZ6	0.0	I1HIZ6_BRADI; Uncharacterized protein
STRING	BRADI2G23967.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-60	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Bradi2g23967.1.p
Entrez Gene	100831034

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]