PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g23870.1.p
Common NameBRADI_2g23870, LOC100845582
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 356aa    MW: 39359.5 Da    PI: 6.4018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g23870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05189208120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + C+ C+k+F+r  n++ H+
  Bradi2g23870.1.p 189 FACHVCSKTFNRYNNMQMHM 208
                       78*****************9 PP
2zf-C2H213.60.0002275297123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C  Cgk+F  k + ++H +++
  Bradi2g23870.1.p 275 FACRRCGKPFAVKGDWRTHEKNC 297
                       78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-5180212No hitNo description
Gene3DG3DSA:3.30.160.602.6E-5189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PROSITE profilePS508688.102233249IPR003616Post-SET domain
SuperFamilySSF576673.12E-6261295No hitNo description
Gene3DG3DSA:3.30.160.607.9E-6261295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVLRAACAME GGAVPYFEWL KPASSPPSTT MPSTDHLQQA VPGGEHRSAT MMCLPLLGRL  60
GAGEKTSPEI KPSVKEEVSN ITEDDCADLN IGLPTSGGYS SEELPAMAVD EEEEEEDDEE  120
TEEEELEEEE MPRHEIEMRK VEAAGEGAVV HGEMMVESVE ESSNGVTPCR DRPYWIPTPA  180
QILTGAVQFA CHVCSKTFNR YNNMQMHMWG HGREYRKGPD SLKGTHATTL ALLRLPCYCC  240
APGCRNNVGH PRARPLKDFR TLQTHYRRKH GAKPFACRRC GKPFAVKGDW RTHEKNCGKR  300
WLCACGSDFK HKRSLNDHAR SFGAGHFHVV VAAAGPLAAA AEPKERVIRF DQQCI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g23870.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026581e-175AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566203.10.0protein TRANSPARENT TESTA 1
SwissprotQ9SGD12e-96ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0Q3IJL90.0A0A0Q3IJL9_BRADI; Uncharacterized protein
STRINGBRADI2G23870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.14e-89WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]